Basic Statistics
Measure | Value |
---|---|
Filename | ERR1142459_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 503188 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 1090 | 0.21661883828708156 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 839 | 0.16673688561730407 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 2410 | 0.0 | 26.45493 | 1 |
CTAACGC | 115 | 9.985544E-4 | 25.89378 | 3 |
GGTATCA | 1820 | 0.0 | 25.5366 | 1 |
GTATGAC | 155 | 2.0836218E-4 | 23.065317 | 1 |
CATGGGT | 680 | 0.0 | 22.771296 | 4 |
TATCAAC | 2795 | 0.0 | 22.586416 | 2 |
CATGGGG | 1795 | 0.0 | 22.229702 | 4 |
ATCAACG | 2730 | 0.0 | 21.815271 | 3 |
AACGCAG | 2800 | 0.0 | 21.252937 | 6 |
GTACATG | 3980 | 0.0 | 21.109402 | 1 |
CAACGCA | 2780 | 0.0 | 20.994453 | 5 |
TCAACGC | 2810 | 0.0 | 20.982254 | 4 |
ACATGGG | 3860 | 0.0 | 20.674774 | 3 |
TACATGG | 4075 | 0.0 | 20.022404 | 2 |
ATGGGGG | 1060 | 0.0 | 19.664616 | 5 |
ACGCAGA | 2995 | 0.0 | 19.475685 | 7 |
GTAAGGC | 185 | 6.904221E-4 | 19.315361 | 3 |
CGCAGAG | 3050 | 0.0 | 19.130205 | 8 |
GTATAGG | 160 | 0.006771135 | 18.620438 | 1 |
TTTTGCG | 80 | 0.006850217 | 18.585207 | 86-87 |