FastQCFastQC Report
Sun 1 Jan 2017
ERR1142422_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1142422_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2383
Sequences flagged as poor quality0
Sequence length125
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAATGGGCAGGGAGAACAGGTAGATCTCCTCCAAGGACTTGATTTTC150.629458665547629No Hit
CCAGCCCGAGTCTGCTTCTGCACTGGCATGATTTTCAGAACCTCATCCTT80.3357112882920688No Hit
ATTTCTTAAAGAATTGAGTACAAAAAACCTTACATAAATTAAAGAATGAA80.3357112882920688No Hit
GGGTTTATTGTACACGAGCTACACTTGGCCACAAGAGAACAGAGCTAGTC70.2937473772555602No Hit
CATTTGTGCGATGCCTCGGTTGGTGAGGATGTAGCGGGCGTGGATCAACC60.2517834662190516No Hit
GTTTTGGTTGTAAGAAAGGCGGTCATTTCTCCAGGCGATCGCGGCGAGGT60.2517834662190516No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT50.20981955518254303No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT50.20981955518254303No Hit
CCACTGTACCGTATGCGAATCTTTGCACCCAACCATGTGGTGGCCAAGTC50.20981955518254303No Hit
CTTCTTGGCCGCCTGGCGGCCATTGTGGCCAAGCAGGTACTTCTGGGCCG40.1678556441460344No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA40.1678556441460344No Hit
GTAAAGTAACAATTCTTGATATCACGTGCCTCTTATGATCCATCTGAAAA40.1678556441460344No Hit
GAAGGAGTGGTAACTGGTTCAGGAACCCTTGCCAGCCTCAGGAAATCCTG30.1258917331095258No Hit
GCAGCACACAGTCCGATAGCTTGTCCCGGCCCTCAGCATCCCTCACTTCT30.1258917331095258No Hit
CCTTTATAAGTGATGGCTGCCATCAGGAAGAAACTGGTGATTGTTGGTGA30.1258917331095258No Hit
CTCATAGTCTTCAGCAAGGACCAGTTCCCAGAGGTCTATGTGCCCACGGT30.1258917331095258No Hit
GGGTGTTCTTCTCCTGCGTCTCGGTTTTCTTCAGCTTGGCCTTATCGAAG30.1258917331095258No Hit
GGATCACTTGGCCCTTCCTCTTCTTGTCGCCTCCCAGTTCAAAATGCTTG30.1258917331095258No Hit
GTATTTGACATCATATTCTTCAATCCCACAGTACCATTCCAGATAGACTA30.1258917331095258No Hit
GCACACAGTCCGATAGCTTGTCCCGGCCCTCAGCATCCCTCACTTCTGCT30.1258917331095258No Hit
GCTGCCGAAGATGGCGGAGGGGCAGGTTCTGGTATTGGATGGCCGAGGCC30.1258917331095258No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30.1258917331095258No Hit
GAATTGAGTACAAAAAACCTTACATAAATTAAAGAATGAATACATTTACA30.1258917331095258No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)