Basic Statistics
Measure | Value |
---|---|
Filename | ERR1307258.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5136911 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTTGTAGAGTATCGACATAAAATGTGTGAGTAAATGACGCCTA | 8518 | 0.1658194973594053 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 7339 | 0.14286796092048315 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7309 | 0.14228395235969632 | No Hit |
GAGTACGGGTAGGCGTCATTTACTCACACATTTTATGTCGATA | 6856 | 0.13346542309181528 | No Hit |
TATCAACGCAGAGTACGGGTAGGCGTCATTTACTCACACATTT | 6736 | 0.131129388848668 | No Hit |
GCTTATAGCAATTTCAAGCGACTTAAATGCATATGGTGTTGTA | 6538 | 0.12727493234747497 | No Hit |
GGTATCAACGCAGAGTACGGGTAGGCGTCATTTACTCACACAT | 6460 | 0.12575651008942923 | No Hit |
GTGTTGTAGAGTATCGACATAAAATGTGTGAGTAAATGACGCC | 5744 | 0.11181817243865039 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4710 | 0.0 | 31.579618 | 1 |
CTTATAG | 1735 | 0.0 | 22.498558 | 2 |
GCTTATA | 1795 | 0.0 | 22.261839 | 1 |
GTATCAA | 7240 | 0.0 | 20.365332 | 2 |
AAGCGAC | 1830 | 0.0 | 20.21858 | 16 |
GCGACTT | 1825 | 0.0 | 20.172602 | 18 |
CGACTTA | 1850 | 0.0 | 19.9 | 19 |
TTATAGC | 1985 | 0.0 | 19.851385 | 3 |
TATAGCA | 2150 | 0.0 | 18.672094 | 4 |
CTTATAC | 3315 | 0.0 | 18.639517 | 37 |
AGCGACT | 2065 | 0.0 | 18.186441 | 17 |
TATACCG | 440 | 0.0 | 17.238636 | 6 |
CAAGCGA | 2200 | 0.0 | 17.070454 | 15 |
ATAGCAA | 2230 | 0.0 | 16.923767 | 5 |
TCAAGCG | 2385 | 0.0 | 15.901468 | 14 |
TAGCAAT | 2345 | 0.0 | 15.778252 | 6 |
GCAATTT | 2445 | 0.0 | 15.511249 | 8 |
GACTTAA | 2425 | 0.0 | 15.028866 | 20 |
ATACCGC | 530 | 0.0 | 15.009434 | 7 |
ATGCATA | 2545 | 0.0 | 14.829076 | 27 |