FastQCFastQC Report
Fri 29 Apr 2016
ERR1307258.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1307258.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5136911
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGTAGAGTATCGACATAAAATGTGTGAGTAAATGACGCCTA85180.1658194973594053No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT73390.14286796092048315No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT73090.14228395235969632No Hit
GAGTACGGGTAGGCGTCATTTACTCACACATTTTATGTCGATA68560.13346542309181528No Hit
TATCAACGCAGAGTACGGGTAGGCGTCATTTACTCACACATTT67360.131129388848668No Hit
GCTTATAGCAATTTCAAGCGACTTAAATGCATATGGTGTTGTA65380.12727493234747497No Hit
GGTATCAACGCAGAGTACGGGTAGGCGTCATTTACTCACACAT64600.12575651008942923No Hit
GTGTTGTAGAGTATCGACATAAAATGTGTGAGTAAATGACGCC57440.11181817243865039No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA47100.031.5796181
CTTATAG17350.022.4985582
GCTTATA17950.022.2618391
GTATCAA72400.020.3653322
AAGCGAC18300.020.2185816
GCGACTT18250.020.17260218
CGACTTA18500.019.919
TTATAGC19850.019.8513853
TATAGCA21500.018.6720944
CTTATAC33150.018.63951737
AGCGACT20650.018.18644117
TATACCG4400.017.2386366
CAAGCGA22000.017.07045415
ATAGCAA22300.016.9237675
TCAAGCG23850.015.90146814
TAGCAAT23450.015.7782526
GCAATTT24450.015.5112498
GACTTAA24250.015.02886620
ATACCGC5300.015.0094347
ATGCATA25450.014.82907627