Basic Statistics
Measure | Value |
---|---|
Filename | ERR1307253.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 13830287 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 80837 | 0.5844925705446316 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 77576 | 0.5609138841442697 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 56780 | 0.4105482409728735 | No Hit |
GTTGTAGAGTATCGACATAAAATGTGTGAGTAAATGACGCCTA | 21533 | 0.1556945275249892 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 20894 | 0.1510742329497573 | No Hit |
GAGTACGGGTAGGCGTCATTTACTCACACATTTTATGTCGATA | 18169 | 0.13137109880655404 | No Hit |
GGTATCAACGCAGAGTACGGGTAGGCGTCATTTACTCACACAT | 16139 | 0.11669316768336044 | No Hit |
TATCAACGCAGAGTACGGGTAGGCGTCATTTACTCACACATTT | 15569 | 0.11257177815615829 | No Hit |
GTGTTGTAGAGTATCGACATAAAATGTGTGAGTAAATGACGCC | 14901 | 0.10774179885059507 | No Hit |
GCTTATAGCAATTTCAAGCGACTTAAATGCATATGGTGTTGTA | 14703 | 0.10631015827798802 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 17790 | 0.0 | 31.467678 | 1 |
GCTTATA | 4075 | 0.0 | 20.384048 | 1 |
GTATCAA | 28535 | 0.0 | 19.579464 | 2 |
CTTATAG | 4120 | 0.0 | 19.398058 | 2 |
CGACTTA | 3810 | 0.0 | 18.597113 | 19 |
CTTATAC | 10855 | 0.0 | 18.406263 | 37 |
GCGACTT | 3895 | 0.0 | 18.333761 | 18 |
AAGCGAC | 4055 | 0.0 | 17.97534 | 16 |
TTATAGC | 4595 | 0.0 | 17.674646 | 3 |
TATAGCA | 5465 | 0.0 | 16.181152 | 4 |
AGCGACT | 4580 | 0.0 | 15.834062 | 17 |
ATAGCAA | 5345 | 0.0 | 15.506081 | 5 |
CAAGCGA | 4780 | 0.0 | 15.403765 | 15 |
TCTTATA | 17120 | 0.0 | 14.48014 | 37 |
TAGCAAT | 5520 | 0.0 | 14.444746 | 6 |
TCAAGCG | 5150 | 0.0 | 14.153398 | 14 |
GTATTAG | 2810 | 0.0 | 13.233096 | 1 |
GCAATTT | 5645 | 0.0 | 13.207263 | 8 |
CTAGTAC | 1245 | 0.0 | 13.076305 | 3 |
AGCAATT | 6010 | 0.0 | 13.0208 | 7 |