FastQCFastQC Report
Fri 29 Apr 2016
ERR1307252.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1307252.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18762352
Sequences flagged as poor quality0
Sequence length43
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT1188860.6336412407143838No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT1158290.6173479742838212No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT863270.46010756007562376No Hit
GTTGTAGAGTATCGACATAAAATGTGTGAGTAAATGACGCCTA320370.17075151345630868No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT310120.1652884457129895No Hit
GAGTACGGGTAGGCGTCATTTACTCACACATTTTATGTCGATA261280.13925759414384722No Hit
TATCAACGCAGAGTACGGGTAGGCGTCATTTACTCACACATTT231470.12336939419961847No Hit
GGTATCAACGCAGAGTACGGGTAGGCGTCATTTACTCACACAT228810.12195166149744979No Hit
GTGTTGTAGAGTATCGACATAAAATGTGTGAGTAAATGACGCC219630.11705888472831126No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA264150.032.013441
GCTTATA54750.020.882191
CTTATAG56950.020.3028962
GTATCAA424900.019.8845622
CTTATAC159000.018.90723237
GCGACTT54750.018.78721418
CGACTTA53850.018.68895119
AAGCGAC56900.018.17486816
TTATAGC64500.017.8976753
AGCGACT62400.016.81009517
TATAGCA77150.016.0181454
ATAGCAA73000.015.5349325
CAAGCGA67800.015.49852615
TAGCAAT75900.015.0876156
TCTTATA249350.014.41568137
GCAATTT74050.014.1404468
TCAAGCG73850.014.02843614
AGCAATT82600.013.8414047
GTATTAG38400.013.77864551
GACTTAA75900.013.67391320