Basic Statistics
Measure | Value |
---|---|
Filename | ERR1307252.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 18762352 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 118886 | 0.6336412407143838 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 115829 | 0.6173479742838212 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 86327 | 0.46010756007562376 | No Hit |
GTTGTAGAGTATCGACATAAAATGTGTGAGTAAATGACGCCTA | 32037 | 0.17075151345630868 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 31012 | 0.1652884457129895 | No Hit |
GAGTACGGGTAGGCGTCATTTACTCACACATTTTATGTCGATA | 26128 | 0.13925759414384722 | No Hit |
TATCAACGCAGAGTACGGGTAGGCGTCATTTACTCACACATTT | 23147 | 0.12336939419961847 | No Hit |
GGTATCAACGCAGAGTACGGGTAGGCGTCATTTACTCACACAT | 22881 | 0.12195166149744979 | No Hit |
GTGTTGTAGAGTATCGACATAAAATGTGTGAGTAAATGACGCC | 21963 | 0.11705888472831126 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 26415 | 0.0 | 32.01344 | 1 |
GCTTATA | 5475 | 0.0 | 20.88219 | 1 |
CTTATAG | 5695 | 0.0 | 20.302896 | 2 |
GTATCAA | 42490 | 0.0 | 19.884562 | 2 |
CTTATAC | 15900 | 0.0 | 18.907232 | 37 |
GCGACTT | 5475 | 0.0 | 18.787214 | 18 |
CGACTTA | 5385 | 0.0 | 18.688951 | 19 |
AAGCGAC | 5690 | 0.0 | 18.174868 | 16 |
TTATAGC | 6450 | 0.0 | 17.897675 | 3 |
AGCGACT | 6240 | 0.0 | 16.810095 | 17 |
TATAGCA | 7715 | 0.0 | 16.018145 | 4 |
ATAGCAA | 7300 | 0.0 | 15.534932 | 5 |
CAAGCGA | 6780 | 0.0 | 15.498526 | 15 |
TAGCAAT | 7590 | 0.0 | 15.087615 | 6 |
TCTTATA | 24935 | 0.0 | 14.415681 | 37 |
GCAATTT | 7405 | 0.0 | 14.140446 | 8 |
TCAAGCG | 7385 | 0.0 | 14.028436 | 14 |
AGCAATT | 8260 | 0.0 | 13.841404 | 7 |
GTATTAG | 3840 | 0.0 | 13.7786455 | 1 |
GACTTAA | 7590 | 0.0 | 13.673913 | 20 |