Basic Statistics
Measure | Value |
---|---|
Filename | ERR1307241.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7836967 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14090 | 0.1797889413085445 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 13803 | 0.1761268102826004 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 9997 | 0.1275621040639829 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5395 | 0.0 | 29.55885 | 1 |
GCTTATA | 1625 | 0.0 | 18.215384 | 1 |
GTATCAA | 8780 | 0.0 | 18.099657 | 2 |
CGACTTA | 1310 | 0.0 | 17.511452 | 19 |
CTTATAG | 1670 | 0.0 | 17.281437 | 2 |
CTTATAC | 4755 | 0.0 | 17.274446 | 37 |
GCGACTT | 1405 | 0.0 | 16.590748 | 18 |
AAGCGAC | 1485 | 0.0 | 16.195286 | 16 |
TTATAGC | 1870 | 0.0 | 15.334224 | 3 |
TCTTATA | 7610 | 0.0 | 14.829172 | 37 |
TATACCG | 380 | 0.0 | 14.605264 | 6 |
GTATAGA | 1150 | 0.0 | 14.47826 | 1 |
AGCGACT | 1685 | 0.0 | 14.272996 | 17 |
TATAGCA | 2225 | 0.0 | 14.134831 | 4 |
TATACTG | 1255 | 0.0 | 13.856573 | 5 |
GTATTAG | 1580 | 0.0 | 13.113924 | 1 |
CAACGCA | 12965 | 0.0 | 12.528346 | 4 |
TTATACT | 1615 | 0.0 | 12.486068 | 4 |
TCAACGC | 13185 | 0.0 | 12.403488 | 3 |
ATCAACG | 13025 | 0.0 | 12.399616 | 2 |