FastQCFastQC Report
Fri 29 Apr 2016
ERR1307240.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1307240.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6054220
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT100130.16538877014710401No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT95700.15807156000277492No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT68910.11382143364463135No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA43650.029.0320721
CGACTTA9950.021.1959819
GTATCAA64500.019.5325582
GCGACTT11300.018.9911518
CTTATAC40900.018.86185837
AAGCGAC11850.018.10970516
CTTATAG13800.017.829712
GCTTATA14850.017.6902351
TTATAGC16050.016.1370723
ATCGATA4000.015.26250123
AGCGACT14100.014.95744617
TCTTATA65450.014.86783837
ATAGCAA18500.014.55
TCGCTAA3200.014.45312614
CGTGCGA2059.276846E-1114.43902510
CAAGCGA15650.014.42172515
TATAGCA20200.014.1955434
TATAGCG800.006302715713.8750015
TAGCAAT19100.013.5602096
GTATAGA10250.013.5365861