Basic Statistics
Measure | Value |
---|---|
Filename | ERR1307240.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6054220 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10013 | 0.16538877014710401 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 9570 | 0.15807156000277492 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 6891 | 0.11382143364463135 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4365 | 0.0 | 29.032072 | 1 |
CGACTTA | 995 | 0.0 | 21.19598 | 19 |
GTATCAA | 6450 | 0.0 | 19.532558 | 2 |
GCGACTT | 1130 | 0.0 | 18.99115 | 18 |
CTTATAC | 4090 | 0.0 | 18.861858 | 37 |
AAGCGAC | 1185 | 0.0 | 18.109705 | 16 |
CTTATAG | 1380 | 0.0 | 17.82971 | 2 |
GCTTATA | 1485 | 0.0 | 17.690235 | 1 |
TTATAGC | 1605 | 0.0 | 16.137072 | 3 |
ATCGATA | 400 | 0.0 | 15.262501 | 23 |
AGCGACT | 1410 | 0.0 | 14.957446 | 17 |
TCTTATA | 6545 | 0.0 | 14.867838 | 37 |
ATAGCAA | 1850 | 0.0 | 14.5 | 5 |
TCGCTAA | 320 | 0.0 | 14.453126 | 14 |
CGTGCGA | 205 | 9.276846E-11 | 14.439025 | 10 |
CAAGCGA | 1565 | 0.0 | 14.421725 | 15 |
TATAGCA | 2020 | 0.0 | 14.195543 | 4 |
TATAGCG | 80 | 0.0063027157 | 13.875001 | 5 |
TAGCAAT | 1910 | 0.0 | 13.560209 | 6 |
GTATAGA | 1025 | 0.0 | 13.536586 | 1 |