Basic Statistics
Measure | Value |
---|---|
Filename | ERR1307237.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8573726 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 47231 | 0.5508806789486858 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 46248 | 0.5394154186872778 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 32755 | 0.382039267408359 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11444 | 0.13347755689883256 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 9900 | 0.0 | 31.188383 | 1 |
CGACTTA | 1885 | 0.0 | 21.100796 | 19 |
GCGACTT | 1985 | 0.0 | 20.130983 | 18 |
CTTATAG | 2330 | 0.0 | 20.008585 | 2 |
GCTTATA | 2370 | 0.0 | 19.983122 | 1 |
AAGCGAC | 2050 | 0.0 | 19.943901 | 16 |
GTATCAA | 16175 | 0.0 | 19.077589 | 2 |
CTTATAC | 7520 | 0.0 | 18.549202 | 37 |
AGCGACT | 2305 | 0.0 | 17.817787 | 17 |
CAAGCGA | 2500 | 0.0 | 16.724 | 15 |
TTATAGC | 2725 | 0.0 | 16.565138 | 3 |
TCAAGCG | 2680 | 0.0 | 15.255597 | 14 |
TATAGCA | 3295 | 0.0 | 14.766314 | 4 |
TCTTATA | 12280 | 0.0 | 14.552931 | 37 |
TAGCAAT | 3185 | 0.0 | 14.172684 | 6 |
ATAGCAA | 3255 | 0.0 | 14.038403 | 5 |
GACTTAA | 3240 | 0.0 | 13.075617 | 20 |
GTATTAG | 1775 | 0.0 | 12.9239435 | 1 |
ATCAACG | 24840 | 0.0 | 12.854669 | 2 |
TCAACGC | 25075 | 0.0 | 12.719441 | 3 |