FastQCFastQC Report
Fri 29 Apr 2016
ERR1307234.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1307234.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6166140
Sequences flagged as poor quality0
Sequence length43
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT257500.4176032331409926No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT249360.4044021056933511No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT168480.27323414648386185No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA65200.031.8642641
GTATCAA101850.020.3073142
CGACTTA9750.018.40512819
CTTATAC40700.018.27272837
CTTATAG12700.017.4803142
AAGCGAC10550.017.3601916
GCTTATA12800.017.343751
GCGACTT10500.017.26666618
AGCGACT12200.015.31557417
TCTTATA65400.014.68119337
TTATAGC15550.014.5144683
TCTATAC9100.014.4340663
TATACTG10300.014.3689325
ATCAACG149050.013.92624
TATCAAC151900.013.7623433
CAACGCA153350.013.5718956
TCAACGC152900.013.5634395
GTCTAAG5500.013.4545461
AACGCAG157200.013.3454217
TATAGCA17050.013.2375364