Basic Statistics
Measure | Value |
---|---|
Filename | ERR1307234.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6166140 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 25750 | 0.4176032331409926 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 24936 | 0.4044021056933511 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 16848 | 0.27323414648386185 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6520 | 0.0 | 31.864264 | 1 |
GTATCAA | 10185 | 0.0 | 20.307314 | 2 |
CGACTTA | 975 | 0.0 | 18.405128 | 19 |
CTTATAC | 4070 | 0.0 | 18.272728 | 37 |
CTTATAG | 1270 | 0.0 | 17.480314 | 2 |
AAGCGAC | 1055 | 0.0 | 17.36019 | 16 |
GCTTATA | 1280 | 0.0 | 17.34375 | 1 |
GCGACTT | 1050 | 0.0 | 17.266666 | 18 |
AGCGACT | 1220 | 0.0 | 15.315574 | 17 |
TCTTATA | 6540 | 0.0 | 14.681193 | 37 |
TTATAGC | 1555 | 0.0 | 14.514468 | 3 |
TCTATAC | 910 | 0.0 | 14.434066 | 3 |
TATACTG | 1030 | 0.0 | 14.368932 | 5 |
ATCAACG | 14905 | 0.0 | 13.9262 | 4 |
TATCAAC | 15190 | 0.0 | 13.762343 | 3 |
CAACGCA | 15335 | 0.0 | 13.571895 | 6 |
TCAACGC | 15290 | 0.0 | 13.563439 | 5 |
GTCTAAG | 550 | 0.0 | 13.454546 | 1 |
AACGCAG | 15720 | 0.0 | 13.345421 | 7 |
TATAGCA | 1705 | 0.0 | 13.237536 | 4 |