Basic Statistics
Measure | Value |
---|---|
Filename | ERR1307233.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3759580 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 15933 | 0.42379733906447 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15584 | 0.4145143872453838 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 11352 | 0.3019486219205337 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3777 | 0.10046334962947989 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3985 | 0.0 | 32.58971 | 1 |
GTATCAA | 6645 | 0.0 | 19.57186 | 2 |
CGACTTA | 595 | 0.0 | 19.277311 | 19 |
CTTATAC | 2725 | 0.0 | 18.941284 | 37 |
AAGCGAC | 665 | 0.0 | 17.526316 | 16 |
TCGCTAA | 285 | 0.0 | 17.526316 | 14 |
CCGCCTA | 270 | 0.0 | 17.12963 | 15 |
GCTTATA | 890 | 0.0 | 16.837078 | 1 |
GCGACTT | 695 | 0.0 | 16.503597 | 18 |
CTTATAG | 810 | 0.0 | 16.21605 | 2 |
AGCGACT | 785 | 0.0 | 14.611465 | 17 |
CTCGCTA | 345 | 0.0 | 14.47826 | 13 |
TCTTATA | 4195 | 0.0 | 14.244339 | 37 |
GTATAGA | 865 | 0.0 | 13.901735 | 1 |
ATCAACG | 9450 | 0.0 | 13.762434 | 4 |
TCTATAC | 620 | 0.0 | 13.725806 | 3 |
ATACCAT | 775 | 0.0 | 13.606451 | 6 |
TCAACGC | 9640 | 0.0 | 13.548755 | 5 |
CAACGCA | 9650 | 0.0 | 13.515544 | 6 |
GTATATA | 865 | 0.0 | 13.4739895 | 1 |