Basic Statistics
Measure | Value |
---|---|
Filename | ERR1307230.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9193733 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 57631 | 0.6268509211655374 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 55407 | 0.6026605297325907 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 39661 | 0.43139168822936236 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13585 | 0.14776369946788753 | No Hit |
GTTGTAGAGTATCGACATAAAATGTGTGAGTAAATGACGCCTA | 11507 | 0.12516134632145615 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 12245 | 0.0 | 32.512863 | 1 |
CTTATAG | 2350 | 0.0 | 20.78298 | 2 |
CTTATAC | 10645 | 0.0 | 19.899014 | 37 |
GCTTATA | 2525 | 0.0 | 19.855444 | 1 |
GTATCAA | 20110 | 0.0 | 19.741919 | 2 |
GCGACTT | 2405 | 0.0 | 18.23077 | 18 |
CGACTTA | 2390 | 0.0 | 18.190376 | 19 |
TTATAGC | 2985 | 0.0 | 17.725294 | 3 |
AAGCGAC | 2730 | 0.0 | 16.06044 | 16 |
AGCGACT | 2750 | 0.0 | 15.809091 | 17 |
TCTTATA | 17600 | 0.0 | 15.283524 | 37 |
TATAGCA | 3620 | 0.0 | 14.820442 | 4 |
ATAGCAA | 3340 | 0.0 | 14.6781435 | 5 |
TATACAC | 3170 | 0.0 | 14.123028 | 37 |
TCAAGCG | 3105 | 0.0 | 14.120773 | 14 |
CAAGCGA | 3190 | 0.0 | 14.034482 | 15 |
CGTGATA | 555 | 0.0 | 14.0 | 24 |
TAGCAAT | 3605 | 0.0 | 13.907074 | 6 |
TTAGACT | 1035 | 0.0 | 13.763286 | 4 |
TAAGCAG | 2630 | 0.0 | 13.435361 | 5 |