FastQCFastQC Report
Fri 29 Apr 2016
ERR1307226.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1307226.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3450043
Sequences flagged as poor quality0
Sequence length43
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT169150.49028374428956395No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT164120.47570421586049794No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT110470.3201989076657885No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36870.10686823323651329No Hit
GTTGTAGAGTATCGACATAAAATGTGTGAGTAAATGACGCCTA36030.10443348097400525No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA44150.031.3012471
CGACTTA8550.021.20467819
GTATCAA67250.020.5219332
AAGCGAC8950.020.05027816
GCGACTT9000.019.93888918
CTTATAG10150.019.8669952
GCTTATA10400.019.0336531
AGCGACT9700.018.30927817
CTTATAC25900.018.07142837
TTATAGC13350.016.0749053
CAAGCGA11750.015.587234515
ATAGCAA13200.015.2765155
GTATAGG5150.015.0873781
CTAATCG2109.094947E-1214.976191526
TAGCAAT13850.014.8267146
TATAGCA14500.014.6724144
AGCAATT13500.014.3888897
GCAATTT13350.013.9962548
ATCAACG98700.013.9640324
ACCGGTC1601.7865023E-713.8750018