Basic Statistics
Measure | Value |
---|---|
Filename | ERR1307226.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3450043 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 16915 | 0.49028374428956395 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16412 | 0.47570421586049794 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 11047 | 0.3201989076657885 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3687 | 0.10686823323651329 | No Hit |
GTTGTAGAGTATCGACATAAAATGTGTGAGTAAATGACGCCTA | 3603 | 0.10443348097400525 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4415 | 0.0 | 31.301247 | 1 |
CGACTTA | 855 | 0.0 | 21.204678 | 19 |
GTATCAA | 6725 | 0.0 | 20.521933 | 2 |
AAGCGAC | 895 | 0.0 | 20.050278 | 16 |
GCGACTT | 900 | 0.0 | 19.938889 | 18 |
CTTATAG | 1015 | 0.0 | 19.866995 | 2 |
GCTTATA | 1040 | 0.0 | 19.033653 | 1 |
AGCGACT | 970 | 0.0 | 18.309278 | 17 |
CTTATAC | 2590 | 0.0 | 18.071428 | 37 |
TTATAGC | 1335 | 0.0 | 16.074905 | 3 |
CAAGCGA | 1175 | 0.0 | 15.5872345 | 15 |
ATAGCAA | 1320 | 0.0 | 15.276515 | 5 |
GTATAGG | 515 | 0.0 | 15.087378 | 1 |
CTAATCG | 210 | 9.094947E-12 | 14.9761915 | 26 |
TAGCAAT | 1385 | 0.0 | 14.826714 | 6 |
TATAGCA | 1450 | 0.0 | 14.672414 | 4 |
AGCAATT | 1350 | 0.0 | 14.388889 | 7 |
GCAATTT | 1335 | 0.0 | 13.996254 | 8 |
ATCAACG | 9870 | 0.0 | 13.964032 | 4 |
ACCGGTC | 160 | 1.7865023E-7 | 13.875001 | 8 |