Basic Statistics
Measure | Value |
---|---|
Filename | ERR1307225.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5366315 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 25418 | 0.4736583670544871 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 25059 | 0.4669684876866155 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 16855 | 0.31408890458349914 | No Hit |
GTTGTAGAGTATCGACATAAAATGTGTGAGTAAATGACGCCTA | 6430 | 0.11982151625463655 | No Hit |
GGTATCAACGCAGAGTACGGGTAGGCGTCATTTACTCACACAT | 5518 | 0.10282661379363679 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5490 | 0.10230484047246574 | No Hit |
GAGTACGGGTAGGCGTCATTTACTCACACATTTTATGTCGATA | 5481 | 0.10213712761923219 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6475 | 0.0 | 31.914286 | 1 |
CGACTTA | 1505 | 0.0 | 21.880398 | 19 |
GCGACTT | 1590 | 0.0 | 21.1761 | 18 |
GCTTATA | 1850 | 0.0 | 21.0 | 1 |
CTTATAG | 1795 | 0.0 | 20.612814 | 2 |
GTATCAA | 10460 | 0.0 | 19.702677 | 2 |
AAGCGAC | 1725 | 0.0 | 19.304348 | 16 |
TTATAGC | 1935 | 0.0 | 18.739017 | 3 |
CTTATAC | 4165 | 0.0 | 18.69988 | 37 |
AGCGACT | 1830 | 0.0 | 18.499998 | 17 |
CAAGCGA | 1930 | 0.0 | 17.637306 | 15 |
TCAAGCG | 2055 | 0.0 | 16.294403 | 14 |
ATAGCAA | 2180 | 0.0 | 16.293577 | 5 |
TATAGCA | 2450 | 0.0 | 16.234694 | 4 |
TAGCAAT | 2230 | 0.0 | 15.845291 | 6 |
GCAATTT | 2260 | 0.0 | 14.898231 | 8 |
GCGTATA | 100 | 1.0945516E-4 | 14.8 | 2 |
TCTATAC | 800 | 0.0 | 14.8 | 3 |
GACTTAA | 2310 | 0.0 | 14.73593 | 20 |
CGTATCG | 205 | 9.276846E-11 | 14.439025 | 10 |