Basic Statistics
Measure | Value |
---|---|
Filename | ERR1307222.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3280563 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2450 | 0.0 | 31.034695 | 1 |
GTATCAA | 3890 | 0.0 | 19.403599 | 2 |
GTATAGG | 290 | 0.0 | 19.137932 | 1 |
CTTATAG | 795 | 0.0 | 17.685534 | 2 |
CTTATAC | 1940 | 0.0 | 17.35567 | 37 |
CGACTTA | 730 | 0.0 | 16.726027 | 19 |
TTATAGC | 965 | 0.0 | 16.678755 | 3 |
GCGACTT | 745 | 0.0 | 16.637583 | 18 |
ATACCGT | 135 | 2.2235326E-8 | 16.444443 | 6 |
GCTTATA | 845 | 0.0 | 16.420118 | 1 |
AAGCGAC | 780 | 0.0 | 15.8910265 | 16 |
TAGCCGG | 210 | 0.0 | 15.857142 | 5 |
TAATACG | 300 | 0.0 | 15.416667 | 4 |
TCTTATA | 3090 | 0.0 | 15.266992 | 37 |
AGCGACT | 830 | 0.0 | 15.156627 | 17 |
GTATAGA | 530 | 0.0 | 14.660377 | 1 |
AATACGC | 265 | 0.0 | 14.660377 | 5 |
TATAGCA | 1075 | 0.0 | 14.455813 | 4 |
GTATTAG | 700 | 0.0 | 14.007143 | 1 |
TAGGACG | 370 | 0.0 | 14.0 | 4 |