Basic Statistics
Measure | Value |
---|---|
Filename | ERR1307221.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3695511 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 8972 | 0.2427810389415699 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8607 | 0.23290419105774546 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 5845 | 0.1581648654272711 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2875 | 0.0 | 31.080002 | 1 |
GTATCAA | 4545 | 0.0 | 19.619362 | 2 |
CTTATAC | 2255 | 0.0 | 18.21286 | 37 |
GTCGTAC | 70 | 0.002593952 | 15.857142 | 1 |
TGTACCG | 165 | 9.767973E-10 | 15.69697 | 5 |
TCTTATA | 3535 | 0.0 | 15.229136 | 37 |
GCTTATA | 605 | 0.0 | 14.983471 | 1 |
CGCGGTC | 360 | 0.0 | 14.902779 | 32 |
TTAGACT | 405 | 0.0 | 14.160494 | 4 |
TAAGACG | 145 | 8.9245805E-7 | 14.034483 | 4 |
CGACTTA | 440 | 0.0 | 13.875 | 19 |
CTTATAG | 615 | 0.0 | 13.837399 | 2 |
CGCCGTA | 430 | 0.0 | 13.767442 | 25 |
ATCAACG | 6505 | 0.0 | 13.707917 | 4 |
GCGACTT | 460 | 0.0 | 13.673913 | 18 |
CAACGCA | 6690 | 0.0 | 13.356502 | 6 |
TCAACGC | 6705 | 0.0 | 13.354213 | 5 |
GTATTAG | 975 | 0.0 | 13.282052 | 1 |
TTAACGG | 195 | 1.0280928E-8 | 13.28205 | 35 |
TATCAAC | 6890 | 0.0 | 13.2373 | 3 |