FastQCFastQC Report
Fri 29 Apr 2016
ERR1307220.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1307220.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3704943
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT61580.1662103843432949No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT58770.1586259221801793No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT41710.11257932983044544No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA36350.026.4649241
CTTATAC19950.019.7518837
CGACTTA6750.019.4592619
GTATCAA50400.018.7936522
GCTTATA8750.017.9714281
CTTATAG8950.017.5698342
TTAGCGA2100.016.73809427
GCGACTT7850.016.49681518
AAGCGAC8150.015.8895716
TATATCG2003.6379788E-1215.7255
TTATAGC10550.014.7298573
AGCGACT9150.014.15300517
TCTTATA30400.013.69243437
GTACTAA2304.0017767E-1113.6739131
TCACGTA2900.013.39655125
TCAACGC70850.013.3429795
ATCAACG71050.013.3314564
CAACGCA71350.013.3013316
TAGACAG7450.013.1610745
CGAATCG850.009409890513.05882416