Basic Statistics
Measure | Value |
---|---|
Filename | ERR1307220.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3704943 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 6158 | 0.1662103843432949 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5877 | 0.1586259221801793 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 4171 | 0.11257932983044544 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3635 | 0.0 | 26.464924 | 1 |
CTTATAC | 1995 | 0.0 | 19.75188 | 37 |
CGACTTA | 675 | 0.0 | 19.45926 | 19 |
GTATCAA | 5040 | 0.0 | 18.793652 | 2 |
GCTTATA | 875 | 0.0 | 17.971428 | 1 |
CTTATAG | 895 | 0.0 | 17.569834 | 2 |
TTAGCGA | 210 | 0.0 | 16.738094 | 27 |
GCGACTT | 785 | 0.0 | 16.496815 | 18 |
AAGCGAC | 815 | 0.0 | 15.88957 | 16 |
TATATCG | 200 | 3.6379788E-12 | 15.725 | 5 |
TTATAGC | 1055 | 0.0 | 14.729857 | 3 |
AGCGACT | 915 | 0.0 | 14.153005 | 17 |
TCTTATA | 3040 | 0.0 | 13.692434 | 37 |
GTACTAA | 230 | 4.0017767E-11 | 13.673913 | 1 |
TCACGTA | 290 | 0.0 | 13.396551 | 25 |
TCAACGC | 7085 | 0.0 | 13.342979 | 5 |
ATCAACG | 7105 | 0.0 | 13.331456 | 4 |
CAACGCA | 7135 | 0.0 | 13.301331 | 6 |
TAGACAG | 745 | 0.0 | 13.161074 | 5 |
CGAATCG | 85 | 0.0094098905 | 13.058824 | 16 |