Basic Statistics
Measure | Value |
---|---|
Filename | ERR1307214.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7109693 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 41605 | 0.5851870115910772 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 39504 | 0.5556358059342366 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 28629 | 0.4026756148261254 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10351 | 0.14558997132506282 | No Hit |
GTTGTAGAGTATCGACATAAAATGTGTGAGTAAATGACGCCTA | 7277 | 0.10235322397183676 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 9110 | 0.0 | 32.61361 | 1 |
CTTATAC | 7805 | 0.0 | 20.90583 | 37 |
GTATCAA | 14485 | 0.0 | 20.396616 | 2 |
GCTTATA | 1875 | 0.0 | 18.746668 | 1 |
CTTATAG | 1875 | 0.0 | 18.648 | 2 |
CGACTTA | 1740 | 0.0 | 17.436783 | 19 |
GCGACTT | 1860 | 0.0 | 16.908602 | 18 |
TTATAGC | 2160 | 0.0 | 16.70139 | 3 |
AAGCGAC | 1930 | 0.0 | 16.487047 | 16 |
TCTTATA | 13245 | 0.0 | 16.20234 | 37 |
AGCGACT | 2115 | 0.0 | 15.044918 | 17 |
ATAGCAA | 2410 | 0.0 | 14.892116 | 5 |
TATAGCA | 2620 | 0.0 | 14.404579 | 4 |
ATAAGCA | 2020 | 0.0 | 14.195545 | 4 |
CAAGCGA | 2295 | 0.0 | 14.026144 | 15 |
TATAAGC | 1870 | 0.0 | 13.751336 | 3 |
TAAGCAG | 2255 | 0.0 | 13.618626 | 5 |
CTATAAG | 2115 | 0.0 | 13.033097 | 2 |
ATCAACG | 22800 | 0.0 | 12.974341 | 4 |
TATACTG | 700 | 0.0 | 12.95 | 5 |