FastQCFastQC Report
Fri 29 Apr 2016
ERR1307214.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1307214.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7109693
Sequences flagged as poor quality0
Sequence length43
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT416050.5851870115910772No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT395040.5556358059342366No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT286290.4026756148261254No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT103510.14558997132506282No Hit
GTTGTAGAGTATCGACATAAAATGTGTGAGTAAATGACGCCTA72770.10235322397183676No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA91100.032.613611
CTTATAC78050.020.9058337
GTATCAA144850.020.3966162
GCTTATA18750.018.7466681
CTTATAG18750.018.6482
CGACTTA17400.017.43678319
GCGACTT18600.016.90860218
TTATAGC21600.016.701393
AAGCGAC19300.016.48704716
TCTTATA132450.016.2023437
AGCGACT21150.015.04491817
ATAGCAA24100.014.8921165
TATAGCA26200.014.4045794
ATAAGCA20200.014.1955454
CAAGCGA22950.014.02614415
TATAAGC18700.013.7513363
TAAGCAG22550.013.6186265
CTATAAG21150.013.0330972
ATCAACG228000.012.9743414
TATACTG7000.012.955