Basic Statistics
Measure | Value |
---|---|
Filename | ERR1307212.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8999808 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 34509 | 0.38344151341895294 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 34313 | 0.38126368918092474 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 23606 | 0.26229448450455833 | No Hit |
GTTGTAGAGTATCGACATAAAATGTGTGAGTAAATGACGCCTA | 13076 | 0.1452919884513092 | No Hit |
TATCAACGCAGAGTACGGGTAGGCGTCATTTACTCACACATTT | 11007 | 0.12230260912232795 | No Hit |
GGTATCAACGCAGAGTACGGGTAGGCGTCATTTACTCACACAT | 10480 | 0.11644692864558888 | No Hit |
GAGTACGGGTAGGCGTCATTTACTCACACATTTTATGTCGATA | 9787 | 0.10874676437541779 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 10860 | 0.0 | 32.741253 | 1 |
GTATCAA | 17105 | 0.0 | 20.700964 | 2 |
CTTATAC | 6465 | 0.0 | 20.116783 | 37 |
GCTTATA | 2255 | 0.0 | 19.607538 | 1 |
CTTATAG | 2155 | 0.0 | 19.401392 | 2 |
TTATAGC | 2500 | 0.0 | 17.316 | 3 |
CGACTTA | 2135 | 0.0 | 16.983606 | 19 |
TCTTATA | 10985 | 0.0 | 16.335913 | 37 |
GCGACTT | 2340 | 0.0 | 16.207266 | 18 |
AAGCGAC | 2375 | 0.0 | 15.656841 | 16 |
TATACCG | 580 | 0.0 | 15.310346 | 6 |
TTAGCGT | 615 | 0.0 | 14.439024 | 4 |
TATAGCA | 3370 | 0.0 | 14.053413 | 4 |
AGCGACT | 2775 | 0.0 | 13.666667 | 17 |
TAATCGA | 815 | 0.0 | 13.619632 | 21 |
GTATAGA | 1210 | 0.0 | 13.607438 | 1 |
ATAGCAA | 3085 | 0.0 | 13.552673 | 5 |
ATCAACG | 26265 | 0.0 | 13.516658 | 4 |
GTATTAG | 1870 | 0.0 | 13.454545 | 1 |
TAGCGTA | 275 | 0.0 | 13.454545 | 5 |