Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042842.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9598142 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 32861 | 0.34236834587360765 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 28686 | 0.29887034386446876 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 26700 | 0.2781788391961694 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG | 26165 | 0.2726048437291301 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 19586 | 0.20406032750922 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 15086 | 0.1571762534873937 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA | 14912 | 0.15536340262521642 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAAT | 11668 | 0.12156519459703763 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 11658 | 0.12146100776587804 | No Hit |
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGA | 10828 | 0.11281350077963007 | No Hit |
GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATAC | 10146 | 0.10570795889454439 | No Hit |
GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCG | 9723 | 0.10130085593649271 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 9631 | 0.10034233708982425 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGACGG | 3715 | 0.0 | 17.030956 | 5 |
TCTAGCG | 2365 | 0.0 | 16.73996 | 28 |
CGCAAGA | 3885 | 0.0 | 16.380953 | 2 |
ACGGACC | 3780 | 0.0 | 16.00397 | 8 |
CTAGCGG | 2465 | 0.0 | 15.985801 | 29 |
CAAGACG | 4300 | 0.0 | 15.832559 | 4 |
GACGGAC | 3875 | 0.0 | 15.707097 | 7 |
CGGACCA | 3905 | 0.0 | 15.633804 | 9 |
GCGCAAG | 4330 | 0.0 | 14.78291 | 1 |
CGAGCCG | 3375 | 0.0 | 14.6903715 | 15 |
CGCAATA | 2680 | 0.0 | 14.634329 | 36 |
AGACGGA | 4235 | 0.0 | 14.415585 | 6 |
TAAACGC | 1815 | 0.0 | 14.371901 | 28 |
GTAAACG | 1835 | 0.0 | 14.114441 | 27 |
CGGTCCA | 2870 | 0.0 | 13.923345 | 10 |
TAGCGGC | 2910 | 0.0 | 13.731958 | 30 |
GCAAGAC | 5090 | 0.0 | 13.702358 | 3 |
TCGTTTA | 2740 | 0.0 | 13.638686 | 30 |
GCGAAAG | 4495 | 0.0 | 13.622913 | 18 |
AGGCCCG | 3780 | 0.0 | 13.556878 | 10 |