Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042830.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7211965 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 50 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19578 | 0.2714655437179742 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 18081 | 0.25070837143552416 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 12316 | 0.17077176608594188 | No Hit |
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG | 7226 | 0.10019460715630206 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGGGTTA | 1100 | 0.0 | 15.640909 | 6 |
TAGGGGT | 1120 | 0.0 | 15.031249 | 4 |
GGGTTAG | 1220 | 0.0 | 14.254099 | 7 |
GTATAGG | 1760 | 0.0 | 13.980114 | 1 |
ATAGGGG | 1245 | 0.0 | 13.819276 | 3 |
TAGACTA | 430 | 0.0 | 13.767442 | 5 |
TAATACT | 1755 | 0.0 | 13.492878 | 4 |
TTAACGG | 1140 | 0.0 | 13.469298 | 35 |
GGTTAGT | 1490 | 0.0 | 12.291946 | 8 |
TATACTG | 795 | 0.0 | 12.100629 | 5 |
TTAATAC | 660 | 0.0 | 12.053031 | 3 |
TAACGGC | 1260 | 0.0 | 12.039682 | 36 |
TATTAGA | 1805 | 0.0 | 11.99169 | 2 |
GTTAGTC | 1285 | 0.0 | 11.805448 | 9 |
GTATTAG | 2290 | 0.0 | 11.713974 | 1 |
ATTAGAG | 1550 | 0.0 | 11.6967745 | 3 |
GTATTAA | 755 | 0.0 | 11.516557 | 1 |
CGAACTA | 1215 | 0.0 | 11.419753 | 29 |
TTAGACT | 585 | 0.0 | 11.384616 | 4 |
CCTCTAG | 1750 | 0.0 | 11.311429 | 1 |