FastQCFastQC Report
Fri 29 Apr 2016
ERR1042812.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042812.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19994058
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT1048810.5245608470276519No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT849130.42469117574831483No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT600130.30015417580563186No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT474210.23717546483060115No Hit
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG415130.20762668588837743No Hit
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT305040.15256532715869883No Hit
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG262540.13130901190743768No Hit
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG256400.12823809953937315No Hit
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG226440.11325364765871941No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTAACGG37650.015.9203235
GGGGTTA38600.015.8160636
TAACGGC38950.015.3889636
TAGGGGT39900.015.208024
GGGTTAG40500.015.1197547
ATAGGGG41650.014.524613
GTATTAG69800.014.2593131
ATTAGAG52100.013.528793
TAATACT67850.013.4966844
CTCTAAT55650.013.4636121
ATCTCGT20650.013.43825737
TTTAACG47250.013.23386334
CTAATAC74100.013.157223
TATTAGA60450.013.0984292
TCTAATA60700.012.9835262
AACGGCC48050.012.93652437
GTATAGG66100.012.8184581
GGTAAAC53950.012.34476435
AATACTG72800.012.172395
ATGCTAG56300.011.99378315