Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042809.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 13798875 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 49498 | 0.35871040211611455 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 43912 | 0.3182288411192941 | No Hit |
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG | 33635 | 0.2437517551249649 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 28633 | 0.20750242320479026 | No Hit |
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT | 24403 | 0.1768477502694966 | No Hit |
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG | 22520 | 0.1632017102843529 | No Hit |
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG | 20913 | 0.1515558333559801 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 20491 | 0.14849761303004774 | No Hit |
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG | 17986 | 0.13034395919957242 | No Hit |
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCC | 16251 | 0.11777047041878413 | No Hit |
CTCTAATACTGGTGATGCTAGAGGTGATGTTTTTGGTAAACAG | 16046 | 0.11628484206139993 | No Hit |
CTTCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGT | 15997 | 0.11592974064914713 | No Hit |
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT | 15525 | 0.11250917194336495 | No Hit |
TCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTG | 14828 | 0.10745803552825864 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGGGTTA | 3405 | 0.0 | 15.919237 | 6 |
TAGGGGT | 3435 | 0.0 | 15.834061 | 4 |
ATAGGGG | 3580 | 0.0 | 15.7094965 | 3 |
TTAACGG | 3960 | 0.0 | 15.603535 | 35 |
TAACGGC | 4000 | 0.0 | 15.2625 | 36 |
GGGTTAG | 3635 | 0.0 | 14.81018 | 7 |
GGGTAAG | 2085 | 0.0 | 14.729016 | 1 |
GTATTAG | 6160 | 0.0 | 14.295454 | 1 |
CTCTAAT | 4900 | 0.0 | 14.158163 | 1 |
ATTAGAG | 5060 | 0.0 | 14.076086 | 3 |
TTTAACG | 4630 | 0.0 | 13.944924 | 34 |
TATTAGA | 5465 | 0.0 | 13.879231 | 2 |
CCGAGTT | 1700 | 0.0 | 13.820587 | 13 |
TAACTAG | 3875 | 0.0 | 13.749678 | 26 |
AACGGCC | 4520 | 0.0 | 13.670354 | 37 |
TCTAATA | 5460 | 0.0 | 13.519231 | 2 |
CTAATAC | 6160 | 0.0 | 13.51461 | 3 |
GGTAAAC | 4800 | 0.0 | 13.335417 | 35 |
AACTAGA | 4055 | 0.0 | 13.321825 | 27 |
TAATACT | 5940 | 0.0 | 13.298821 | 4 |