FastQCFastQC Report
Fri 29 Apr 2016
ERR1042809.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042809.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13798875
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT494980.35871040211611455No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT439120.3182288411192941No Hit
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG336350.2437517551249649No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT286330.20750242320479026No Hit
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT244030.1768477502694966No Hit
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG225200.1632017102843529No Hit
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG209130.1515558333559801No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT204910.14849761303004774No Hit
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG179860.13034395919957242No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCC162510.11777047041878413No Hit
CTCTAATACTGGTGATGCTAGAGGTGATGTTTTTGGTAAACAG160460.11628484206139993No Hit
CTTCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGT159970.11592974064914713No Hit
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT155250.11250917194336495No Hit
TCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTG148280.10745803552825864No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGGTTA34050.015.9192376
TAGGGGT34350.015.8340614
ATAGGGG35800.015.70949653
TTAACGG39600.015.60353535
TAACGGC40000.015.262536
GGGTTAG36350.014.810187
GGGTAAG20850.014.7290161
GTATTAG61600.014.2954541
CTCTAAT49000.014.1581631
ATTAGAG50600.014.0760863
TTTAACG46300.013.94492434
TATTAGA54650.013.8792312
CCGAGTT17000.013.82058713
TAACTAG38750.013.74967826
AACGGCC45200.013.67035437
TCTAATA54600.013.5192312
CTAATAC61600.013.514613
GGTAAAC48000.013.33541735
AACTAGA40550.013.32182527
TAATACT59400.013.2988214