Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042807.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9353936 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG | 30360 | 0.32456925084798527 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 29826 | 0.3188604241038211 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 29424 | 0.31456276801551775 | No Hit |
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT | 22809 | 0.2438438749206751 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 20769 | 0.22203487387555354 | No Hit |
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG | 19453 | 0.2079659300640928 | No Hit |
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG | 18629 | 0.1991568041517496 | No Hit |
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG | 16833 | 0.17995633068261319 | No Hit |
CTTCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGT | 14820 | 0.1584359781807359 | No Hit |
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT | 14358 | 0.15349688088522306 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13784 | 0.14736042666958593 | No Hit |
TCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTG | 13490 | 0.14421736475425959 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAGGGGT | 1315 | 0.0 | 14.912548 | 4 |
TTAACGG | 1195 | 0.0 | 14.707112 | 35 |
GGGGTTA | 1365 | 0.0 | 13.824176 | 6 |
TAATACT | 2605 | 0.0 | 13.706335 | 4 |
TAACGGC | 1255 | 0.0 | 13.561752 | 36 |
ATAGGGG | 1350 | 0.0 | 13.429629 | 3 |
GTATTAG | 2475 | 0.0 | 12.781817 | 1 |
GGGTTAG | 1400 | 0.0 | 12.553572 | 7 |
CTCTAAT | 2155 | 0.0 | 12.361948 | 1 |
GTATACG | 305 | 1.8189894E-12 | 12.131147 | 1 |
TTAGGAC | 1360 | 0.0 | 11.8345585 | 3 |
CCCCTAT | 1705 | 0.0 | 11.82698 | 1 |
AATACTG | 3125 | 0.0 | 11.7808 | 5 |
TCTAATA | 2390 | 0.0 | 11.688284 | 2 |
CTAATAC | 2880 | 0.0 | 11.626737 | 3 |
CGAACTA | 955 | 0.0 | 11.623036 | 29 |
GTATAGG | 2300 | 0.0 | 11.502174 | 1 |
TTTAACG | 1700 | 0.0 | 11.426471 | 34 |
TAGGACC | 1540 | 0.0 | 11.292208 | 4 |
ATTAGAG | 1895 | 0.0 | 11.2269125 | 3 |