Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042806.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9356463 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 26972 | 0.28827132646171955 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 22596 | 0.2415015161177894 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 18571 | 0.19848312337685725 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11162 | 0.11929721733522593 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAACGGC | 1020 | 0.0 | 12.877451 | 36 |
GTATTAG | 2410 | 0.0 | 12.819503 | 1 |
TTAACGG | 1090 | 0.0 | 12.050459 | 35 |
GGGTAAG | 895 | 0.0 | 11.988827 | 1 |
TAATACT | 2365 | 0.0 | 11.577167 | 4 |
TAGGGGT | 1215 | 0.0 | 11.572016 | 4 |
GTATAGG | 2000 | 0.0 | 11.5625 | 1 |
CTATACC | 2000 | 0.0 | 11.469999 | 4 |
CTACGCT | 275 | 7.876224E-10 | 11.436363 | 4 |
CCCCTAT | 1575 | 0.0 | 11.393651 | 1 |
CTAATAC | 2535 | 0.0 | 11.238659 | 3 |
TCTAATA | 2105 | 0.0 | 10.897862 | 2 |
CCTATAC | 2270 | 0.0 | 10.839207 | 3 |
CTACACT | 1700 | 0.0 | 10.77353 | 4 |
TCTATAC | 1050 | 0.0 | 10.747619 | 3 |
TACACTG | 2500 | 0.0 | 10.656 | 5 |
TAACTAG | 1535 | 0.0 | 10.485342 | 26 |
TACGGGT | 2090 | 0.0 | 10.444976 | 4 |
CTAGACA | 1170 | 0.0 | 10.435898 | 4 |
TAGTACT | 1100 | 0.0 | 10.427272 | 4 |