Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042803.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11111825 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 30639 | 0.2757332841364942 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 25687 | 0.23116814744652656 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 21977 | 0.19778029261619942 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12288 | 0.11058489492050136 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTAACGG | 2070 | 0.0 | 15.818841 | 35 |
TAGGGGT | 1905 | 0.0 | 15.63517 | 4 |
TAACGGC | 2165 | 0.0 | 15.039261 | 36 |
TAATACT | 3755 | 0.0 | 14.287616 | 4 |
ATAGGGG | 1925 | 0.0 | 13.935065 | 3 |
GGGGTTA | 1865 | 0.0 | 13.589812 | 6 |
GTATTAG | 4055 | 0.0 | 13.549938 | 1 |
GGGTTAG | 2035 | 0.0 | 13.363636 | 7 |
TCTAATA | 3615 | 0.0 | 13.1521435 | 2 |
CTCTAAT | 3305 | 0.0 | 12.9304085 | 1 |
ATTAGAG | 3115 | 0.0 | 12.887641 | 3 |
TTTAACG | 2770 | 0.0 | 12.756317 | 34 |
AACGGCC | 2645 | 0.0 | 12.729678 | 37 |
GGTAAAC | 3085 | 0.0 | 12.593192 | 35 |
ATGCTAG | 3195 | 0.0 | 12.333334 | 15 |
AATACTG | 4160 | 0.0 | 12.31851 | 5 |
GGGTAAG | 1610 | 0.0 | 12.295032 | 1 |
GTATAGG | 3220 | 0.0 | 12.237577 | 1 |
CTAATAC | 4735 | 0.0 | 12.151003 | 3 |
TATTAGA | 3690 | 0.0 | 12.082656 | 2 |