Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042798.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 13059081 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 50519 | 0.3868495799972448 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 42113 | 0.322480578840119 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 30986 | 0.23727550200507985 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17203 | 0.13173208742636638 | No Hit |
CTCTAATACTGGTGATGCTAGAGGTGATGTTTTTGGTAAACAG | 14837 | 0.11361442662006616 | No Hit |
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCC | 13573 | 0.1039353381757874 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 20125 | 0.0 | 16.730434 | 1 |
TTAACGG | 3440 | 0.0 | 15.165697 | 35 |
TAACGGC | 3575 | 0.0 | 14.541259 | 36 |
CTCTAAT | 4810 | 0.0 | 14.0 | 1 |
GTATTAG | 5885 | 0.0 | 13.674597 | 1 |
ATTAGAG | 4580 | 0.0 | 13.531659 | 3 |
GGTAAAC | 4695 | 0.0 | 13.27902 | 35 |
AATACTG | 5870 | 0.0 | 13.205281 | 5 |
AACGGCC | 3990 | 0.0 | 13.075188 | 37 |
CTAATAC | 6470 | 0.0 | 12.952859 | 3 |
TAATACT | 6350 | 0.0 | 12.906299 | 4 |
TATTAGA | 5135 | 0.0 | 12.78968 | 2 |
TCTAATA | 5700 | 0.0 | 12.657894 | 2 |
ATGCTAG | 4975 | 0.0 | 12.643216 | 15 |
TTTAACG | 4320 | 0.0 | 12.590278 | 34 |
GGGGTTA | 2640 | 0.0 | 12.403409 | 6 |
ATAGGGG | 2575 | 0.0 | 12.357281 | 3 |
GATGCTA | 5205 | 0.0 | 12.297791 | 14 |
CCGAGTT | 1625 | 0.0 | 12.295384 | 13 |
TACTGGT | 5545 | 0.0 | 12.277728 | 7 |