Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042787.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 12192048 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 64937 | 0.5326176537362713 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 63549 | 0.5212331841213224 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 41754 | 0.3424691241373065 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 30004 | 0.24609483164764442 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 29260 | 0.0 | 14.757007 | 1 |
TTAACGG | 1940 | 0.0 | 14.685567 | 35 |
TAACGGC | 2105 | 0.0 | 13.534442 | 36 |
GTATTAG | 3795 | 0.0 | 12.967062 | 1 |
TTTAACG | 2320 | 0.0 | 12.838362 | 34 |
CTCTAAT | 3235 | 0.0 | 12.352396 | 1 |
AACGGCC | 2435 | 0.0 | 12.0041065 | 37 |
TAATACT | 4850 | 0.0 | 11.977319 | 4 |
CTAATAC | 4275 | 0.0 | 11.857309 | 3 |
GGGTAAG | 1725 | 0.0 | 11.797101 | 1 |
ATTAGAG | 2980 | 0.0 | 11.733221 | 3 |
TCTAATA | 4005 | 0.0 | 11.363296 | 2 |
CGAACTA | 2595 | 0.0 | 11.33526 | 24 |
CCGAGTT | 1250 | 0.0 | 11.248 | 13 |
TATTAGA | 3985 | 0.0 | 11.188207 | 2 |
TAGGACC | 2185 | 0.0 | 11.176202 | 4 |
TTATGCG | 1810 | 0.0 | 11.140883 | 4 |
GTATCAA | 38935 | 0.0 | 11.066263 | 2 |
AATACTG | 4965 | 0.0 | 10.768379 | 5 |
GGTAAAC | 3265 | 0.0 | 10.765697 | 35 |