Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042785.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 15307607 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 75650 | 0.49419873400198994 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 73892 | 0.48271424788995426 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 49030 | 0.3202982673908469 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 37581 | 0.24550538826872154 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCTAAT | 4265 | 0.0 | 13.273153 | 1 |
TAATACT | 5970 | 0.0 | 13.201005 | 4 |
TTAACGG | 3085 | 0.0 | 13.072933 | 35 |
AATACTG | 5695 | 0.0 | 12.993854 | 5 |
TAACGGC | 3150 | 0.0 | 12.744444 | 36 |
TCTATAC | 1835 | 0.0 | 12.501362 | 3 |
CTAATAC | 5700 | 0.0 | 12.463158 | 3 |
GGGTAAG | 2165 | 0.0 | 12.390301 | 1 |
GTATTAG | 5570 | 0.0 | 12.289048 | 1 |
GGTAAAC | 4270 | 0.0 | 11.957846 | 35 |
TCTAATA | 5295 | 0.0 | 11.879132 | 2 |
CCGAGTT | 1765 | 0.0 | 11.634561 | 13 |
TACTGGT | 5195 | 0.0 | 11.60924 | 7 |
ATACTGG | 5545 | 0.0 | 11.510369 | 6 |
GGTATCA | 44270 | 0.0 | 11.4710865 | 1 |
AACGGCC | 3575 | 0.0 | 11.436364 | 37 |
ATTAGAG | 4100 | 0.0 | 11.4158535 | 3 |
TATACTG | 2145 | 0.0 | 11.384615 | 5 |
TTTAACG | 3785 | 0.0 | 11.29062 | 34 |
TATTAGA | 5135 | 0.0 | 11.132424 | 2 |