Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042777.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8924567 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 38987 | 0.4368503256236409 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 34476 | 0.38630445600329966 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 21611 | 0.2421518041155386 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17777 | 0.19919173669714174 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8630 | 0.0 | 27.096174 | 1 |
GTATCAA | 13200 | 0.0 | 17.617046 | 2 |
TATACCG | 250 | 1.6007107E-10 | 12.58 | 5 |
TTAACGG | 1105 | 0.0 | 12.5565605 | 35 |
ATCAACG | 19400 | 0.0 | 11.97732 | 4 |
TCAACGC | 19650 | 0.0 | 11.806106 | 5 |
AGGTCGC | 1650 | 0.0 | 11.772728 | 35 |
TAATACT | 2635 | 0.0 | 11.724857 | 4 |
CAACGCA | 20185 | 0.0 | 11.5115185 | 6 |
TAACGGC | 1200 | 0.0 | 11.254167 | 36 |
TATCAAC | 21235 | 0.0 | 11.238522 | 3 |
TATACTG | 1420 | 0.0 | 11.204226 | 5 |
CTACACT | 1500 | 0.0 | 11.099999 | 4 |
AACGCAG | 21275 | 0.0 | 10.991304 | 7 |
TTAGACT | 945 | 0.0 | 10.962963 | 4 |
GTATTAG | 2270 | 0.0 | 10.920705 | 1 |
TATTAGA | 2270 | 0.0 | 10.920705 | 2 |
CTAATAC | 2560 | 0.0 | 10.912109 | 3 |
GGGTAAG | 1255 | 0.0 | 10.613546 | 1 |
ATTAGAG | 1825 | 0.0 | 10.441095 | 3 |