FastQCFastQC Report
Fri 29 Apr 2016
ERR1042777.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042777.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8924567
Sequences flagged as poor quality0
Sequence length43
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT389870.4368503256236409No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT344760.38630445600329966No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT216110.2421518041155386No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT177770.19919173669714174No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA86300.027.0961741
GTATCAA132000.017.6170462
TATACCG2501.6007107E-1012.585
TTAACGG11050.012.556560535
ATCAACG194000.011.977324
TCAACGC196500.011.8061065
AGGTCGC16500.011.77272835
TAATACT26350.011.7248574
CAACGCA201850.011.51151856
TAACGGC12000.011.25416736
TATCAAC212350.011.2385223
TATACTG14200.011.2042265
CTACACT15000.011.0999994
AACGCAG212750.010.9913047
TTAGACT9450.010.9629634
GTATTAG22700.010.9207051
TATTAGA22700.010.9207052
CTAATAC25600.010.9121093
GGGTAAG12550.010.6135461
ATTAGAG18250.010.4410953