FastQCFastQC Report
Fri 29 Apr 2016
ERR1042761.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042761.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5419871
Sequences flagged as poor quality0
Sequence length43
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT557491.0286038173233274No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT350170.6460854880125375No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT227420.41960408282780165No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT201910.3725365419213852No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT71740.13236477399554344No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT62640.11557470648286647No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACGCAG252100.013.4145175
TAATACT17250.012.5478264
ATACGAC1050.002645755712.3333333
GGTATCA205300.012.0389671
CGAACTA11300.011.78761124
GAGTACG167950.011.775231
AGTACGG167400.011.7586612
TTAACGG9500.011.68421135
TAACGGC9450.011.55026436
TACTCCG12050.011.5145235
ACGCAGA294200.011.5137666
GTATTAG17200.011.508721
CTAATAC17500.011.4171433
CGCAGAG296600.011.4081257
TATACTG8950.011.3687155
CTACACT9650.011.3108814
TACCCCG7950.011.1698115
ATTAGAG13100.011.1564883
CGTATTA3650.011.15068515
CGGGAAT17150.011.0029156