Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042761.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5419871 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 55749 | 1.0286038173233274 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 35017 | 0.6460854880125375 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 22742 | 0.41960408282780165 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 20191 | 0.3725365419213852 | No Hit |
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7174 | 0.13236477399554344 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6264 | 0.11557470648286647 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AACGCAG | 25210 | 0.0 | 13.414517 | 5 |
TAATACT | 1725 | 0.0 | 12.547826 | 4 |
ATACGAC | 105 | 0.0026457557 | 12.333333 | 3 |
GGTATCA | 20530 | 0.0 | 12.038967 | 1 |
CGAACTA | 1130 | 0.0 | 11.787611 | 24 |
GAGTACG | 16795 | 0.0 | 11.77523 | 1 |
AGTACGG | 16740 | 0.0 | 11.758661 | 2 |
TTAACGG | 950 | 0.0 | 11.684211 | 35 |
TAACGGC | 945 | 0.0 | 11.550264 | 36 |
TACTCCG | 1205 | 0.0 | 11.514523 | 5 |
ACGCAGA | 29420 | 0.0 | 11.513766 | 6 |
GTATTAG | 1720 | 0.0 | 11.50872 | 1 |
CTAATAC | 1750 | 0.0 | 11.417143 | 3 |
CGCAGAG | 29660 | 0.0 | 11.408125 | 7 |
TATACTG | 895 | 0.0 | 11.368715 | 5 |
CTACACT | 965 | 0.0 | 11.310881 | 4 |
TACCCCG | 795 | 0.0 | 11.169811 | 5 |
ATTAGAG | 1310 | 0.0 | 11.156488 | 3 |
CGTATTA | 365 | 0.0 | 11.150685 | 15 |
CGGGAAT | 1715 | 0.0 | 11.002915 | 6 |