Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042753.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7975648 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 115593 | 1.449324242995679 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 58810 | 0.7373695529190858 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 58279 | 0.7307117866786498 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 32801 | 0.41126438879950566 | No Hit |
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 18981 | 0.2379869322216828 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGT | 17791 | 0.22306651447004683 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14475 | 0.1814899554243116 | No Hit |
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12511 | 0.15686499705102333 | No Hit |
CAGTTGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 11584 | 0.14524211700416068 | No Hit |
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG | 10237 | 0.12835320716260296 | No Hit |
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT | 8169 | 0.10242427950681876 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGAGAC | 3050 | 0.0 | 22.078688 | 22 |
CACGAGA | 3035 | 0.0 | 22.065899 | 21 |
ATCTCGT | 3000 | 0.0 | 21.583332 | 37 |
CCCACGA | 3170 | 0.0 | 21.184542 | 19 |
CGAGACT | 3220 | 0.0 | 21.085403 | 23 |
TCTCCGA | 3225 | 0.0 | 20.765892 | 11 |
CGAGCCC | 3335 | 0.0 | 20.191904 | 15 |
ATCTCCG | 3400 | 0.0 | 19.914707 | 10 |
TATACAC | 3640 | 0.0 | 19.872252 | 3 |
GCCCACG | 3410 | 0.0 | 19.693548 | 18 |
CCACGAG | 3430 | 0.0 | 19.686588 | 20 |
TCCGAGC | 3540 | 0.0 | 19.545197 | 13 |
CCGAGCC | 3655 | 0.0 | 19.031466 | 14 |
CATCTCG | 3475 | 0.0 | 18.952518 | 36 |
TACACAT | 4020 | 0.0 | 18.7301 | 5 |
CTCCGAG | 3790 | 0.0 | 17.865435 | 12 |
CTTATAC | 4090 | 0.0 | 17.007334 | 1 |
ATACACA | 4530 | 0.0 | 16.948126 | 4 |
GACTCCT | 3935 | 0.0 | 16.87802 | 26 |
ACACATC | 4185 | 0.0 | 16.753883 | 6 |