Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042728.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8245692 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 22838 | 0.2769688705326369 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 21172 | 0.2567643807214725 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 14733 | 0.17867511908036343 | No Hit |
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCC | 10843 | 0.13149896940123398 | No Hit |
CTCTAATACTGGTGATGCTAGAGGTGATGTTTTTGGTAAACAG | 10120 | 0.12273075443516444 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9790 | 0.11872866461662647 | No Hit |
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCG | 9221 | 0.11182809156587464 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTAACGG | 2780 | 0.0 | 15.638489 | 35 |
ATTAGAG | 3060 | 0.0 | 15.477124 | 3 |
TATTAGA | 3290 | 0.0 | 15.013679 | 2 |
CTCTAAT | 2445 | 0.0 | 14.981595 | 1 |
TAACGGC | 2870 | 0.0 | 14.954704 | 36 |
GGGGTTA | 2110 | 0.0 | 14.905212 | 6 |
GTATTAG | 3780 | 0.0 | 14.731482 | 1 |
TTAGGAC | 1740 | 0.0 | 14.45977 | 3 |
TTTAACG | 3055 | 0.0 | 14.291326 | 34 |
ATAGGGG | 2215 | 0.0 | 13.86456 | 3 |
TAGGGGT | 2330 | 0.0 | 13.815452 | 4 |
GTGACAC | 3275 | 0.0 | 13.726717 | 24 |
GGGTTAG | 2300 | 0.0 | 13.673912 | 7 |
CACATGT | 3260 | 0.0 | 13.619632 | 28 |
TCTAATA | 2980 | 0.0 | 13.595637 | 2 |
TAATACT | 3320 | 0.0 | 13.48494 | 4 |
AACGGCC | 3175 | 0.0 | 13.459842 | 37 |
CTAATAC | 3355 | 0.0 | 13.454545 | 3 |
TCTATAC | 760 | 0.0 | 13.388158 | 3 |
CCTCTAG | 2800 | 0.0 | 13.346428 | 1 |