FastQCFastQC Report
Fri 29 Apr 2016
ERR1042722.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042722.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11893528
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT516250.4340595994729234No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT506100.42552554633074385No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT348230.2927894902168642No Hit
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG250750.21082894831541996No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT216800.18228401194330227No Hit
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG173870.14618875072224152No Hit
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG156090.1312394438386995No Hit
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT150770.1267664228814192No Hit
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT121930.10251794084984707No Hit
CTCTAATACTGGTGATGCTAGAGGTGATGTTTTTGGTAAACAG120960.10170237123921515No Hit
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG120170.10103814444292727No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTAACGG28300.015.36219135
TAACGGC28900.014.979238536
GGGGTTA27550.014.5716896
TATTAGA36300.014.3719012
GTATTAG44100.014.3469391
ATTAGAG35700.013.9397763
TTTAACG33050.013.88199634
CTAATAC46600.013.6963523
ATAGGGG28000.013.5446423
TAGGGGT30350.013.5321254
AATACTG42500.013.276475
TAATACT47100.013.2367314
GGGTTAG30750.013.2357727
TCTAATA40100.013.0561092
CTCTAAT37400.012.9598941
AACGGCC33900.012.82448437
TAGGACC23800.012.5147064
ATGCTAG36500.012.46849315
TTAGAGG53200.012.3101514
GGTAAAC35750.012.21258835