Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042716.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 13459413 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 33807 | 0.2511773730399684 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 33498 | 0.2488815819828101 | No Hit |
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG | 23154 | 0.17202830465191907 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 20894 | 0.15523708203322092 | No Hit |
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG | 16465 | 0.12233074354728544 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16219 | 0.1205030263949847 | No Hit |
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT | 16217 | 0.12048816690594158 | No Hit |
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG | 15645 | 0.11623835303961622 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTAACGG | 1525 | 0.0 | 14.557377 | 35 |
TAACGGC | 1680 | 0.0 | 13.104166 | 36 |
TATACTG | 1470 | 0.0 | 12.333333 | 5 |
TACTCCG | 2865 | 0.0 | 12.139616 | 5 |
TATTAGA | 2640 | 0.0 | 12.123106 | 2 |
GTATTAG | 3440 | 0.0 | 11.992732 | 1 |
TAATACT | 2780 | 0.0 | 11.845324 | 4 |
TTTAACG | 1960 | 0.0 | 11.704082 | 34 |
TCTAATA | 2055 | 0.0 | 11.703163 | 2 |
CTAGTAC | 790 | 0.0 | 11.474685 | 3 |
GGGGTTA | 1500 | 0.0 | 11.470001 | 6 |
CTAATAC | 3120 | 0.0 | 11.384616 | 3 |
GGACCGT | 915 | 0.0 | 11.322404 | 6 |
TAGACTG | 1210 | 0.0 | 11.31405 | 5 |
GAACCGT | 785 | 0.0 | 11.312102 | 6 |
ATTAGAC | 610 | 0.0 | 11.221312 | 3 |
TTAGGAC | 1500 | 0.0 | 11.1 | 3 |
ATTAGAG | 2405 | 0.0 | 11.076923 | 3 |
TTAATAC | 1295 | 0.0 | 11.0 | 3 |
AACGGTA | 355 | 3.6379788E-12 | 10.943663 | 18 |