FastQCFastQC Report
Fri 29 Apr 2016
ERR1042710.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042710.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2024110
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG63560.3140145545449605No Hit
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG58180.28743497141953744No Hit
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG52070.2572488649332299No Hit
TCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTG42910.21199440741856915No Hit
GGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAG42110.20804205305047652No Hit
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT39840.19682724753101363No Hit
TATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGTA36360.17963450602981063No Hit
AAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAA36310.17938748388180484No Hit
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT35890.1773124978385562No Hit
ACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGA33030.16318283097262498No Hit
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG33000.16303461768382152No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT30740.1518692165939598No Hit
GGTATCAACGCAGAGTACGGAAGCAGTGGTATCAACGCAGAGT26680.13181101817588964No Hit
CAGTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGC24660.12183132339645573No Hit
GTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAG24170.11941050634599898No Hit
TATCAACGCAGAGTACGGAAGCAGTGGTATCAACGCAGAGTAC23060.11392661466027044No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT22600.11165401089861718No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATATC957.063919E-515.5789484
TATATCG855.366657E-415.2352935
CCTAGAC1001.0940169E-414.83
CAACCGT750.00410584114.86
TATACCG908.277849E-414.3888895
ATACCGA1051.6566139E-414.0952386
CGATAGA1458.9188325E-714.03448437
ATAGGCG1601.7852653E-713.87532
GTAAGAC2355.638867E-1113.3829793
GTTTATA1551.8893406E-613.1290322
CGTTACC850.00940796513.05882314
ACCGCGT2001.4641046E-812.9500018
ATGTATA1153.5792618E-412.8695651
TTATACC1153.5792618E-412.8695654
CGAACTA2451.1459633E-1012.83673424
TACCGTC1307.002949E-512.8076937
GGGTATA1451.3730825E-512.7586211
TTTAGAC1755.31003E-712.6857143
CTAGACT1653.8069902E-612.3333334
ATAGGAC1501.9451512E-512.3333333