Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042710.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2024110 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 52 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG | 6356 | 0.3140145545449605 | No Hit |
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG | 5818 | 0.28743497141953744 | No Hit |
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG | 5207 | 0.2572488649332299 | No Hit |
TCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTG | 4291 | 0.21199440741856915 | No Hit |
GGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAG | 4211 | 0.20804205305047652 | No Hit |
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT | 3984 | 0.19682724753101363 | No Hit |
TATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGTA | 3636 | 0.17963450602981063 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAA | 3631 | 0.17938748388180484 | No Hit |
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT | 3589 | 0.1773124978385562 | No Hit |
ACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGA | 3303 | 0.16318283097262498 | No Hit |
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG | 3300 | 0.16303461768382152 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3074 | 0.1518692165939598 | No Hit |
GGTATCAACGCAGAGTACGGAAGCAGTGGTATCAACGCAGAGT | 2668 | 0.13181101817588964 | No Hit |
CAGTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGC | 2466 | 0.12183132339645573 | No Hit |
GTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAG | 2417 | 0.11941050634599898 | No Hit |
TATCAACGCAGAGTACGGAAGCAGTGGTATCAACGCAGAGTAC | 2306 | 0.11392661466027044 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 2260 | 0.11165401089861718 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATATC | 95 | 7.063919E-5 | 15.578948 | 4 |
TATATCG | 85 | 5.366657E-4 | 15.235293 | 5 |
CCTAGAC | 100 | 1.0940169E-4 | 14.8 | 3 |
CAACCGT | 75 | 0.004105841 | 14.8 | 6 |
TATACCG | 90 | 8.277849E-4 | 14.388889 | 5 |
ATACCGA | 105 | 1.6566139E-4 | 14.095238 | 6 |
CGATAGA | 145 | 8.9188325E-7 | 14.034484 | 37 |
ATAGGCG | 160 | 1.7852653E-7 | 13.875 | 32 |
GTAAGAC | 235 | 5.638867E-11 | 13.382979 | 3 |
GTTTATA | 155 | 1.8893406E-6 | 13.129032 | 2 |
CGTTACC | 85 | 0.009407965 | 13.058823 | 14 |
ACCGCGT | 200 | 1.4641046E-8 | 12.950001 | 8 |
ATGTATA | 115 | 3.5792618E-4 | 12.869565 | 1 |
TTATACC | 115 | 3.5792618E-4 | 12.869565 | 4 |
CGAACTA | 245 | 1.1459633E-10 | 12.836734 | 24 |
TACCGTC | 130 | 7.002949E-5 | 12.807693 | 7 |
GGGTATA | 145 | 1.3730825E-5 | 12.758621 | 1 |
TTTAGAC | 175 | 5.31003E-7 | 12.685714 | 3 |
CTAGACT | 165 | 3.8069902E-6 | 12.333333 | 4 |
ATAGGAC | 150 | 1.9451512E-5 | 12.333333 | 3 |