Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042707.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4039843 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 53 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG | 6721 | 0.1663678514239291 | No Hit |
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG | 5840 | 0.14456007325037137 | No Hit |
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG | 5426 | 0.13431215024940327 | No Hit |
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT | 4239 | 0.10492982029252126 | No Hit |
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT | 4074 | 0.10084550315445427 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 405 | 0.0 | 15.530864 | 5 |
TTAACGG | 805 | 0.0 | 14.248447 | 35 |
TAACGGC | 865 | 0.0 | 13.046244 | 36 |
CGAACTA | 840 | 0.0 | 12.994047 | 24 |
GGGTAAG | 445 | 0.0 | 12.88764 | 1 |
TATTAGA | 1070 | 0.0 | 12.794393 | 2 |
ATTAGAG | 1020 | 0.0 | 12.696078 | 3 |
GTATTAG | 1255 | 0.0 | 12.5298815 | 1 |
CGTATTA | 135 | 9.972041E-5 | 12.333334 | 15 |
CCGATAA | 120 | 5.12639E-4 | 12.333334 | 9 |
TCTAGCA | 780 | 0.0 | 12.333334 | 3 |
TTACACT | 320 | 0.0 | 12.140625 | 4 |
TTTAACG | 965 | 0.0 | 12.077721 | 34 |
CGATAGA | 400 | 0.0 | 12.025001 | 37 |
TCACGTA | 785 | 0.0 | 11.78344 | 25 |
GTTTAAC | 975 | 0.0 | 11.764102 | 33 |
GTAGCAC | 475 | 0.0 | 11.684211 | 3 |
GTTTACC | 545 | 0.0 | 11.541285 | 15 |
GTATACT | 305 | 3.092282E-11 | 11.5245905 | 4 |
GCGAACT | 980 | 0.0 | 11.5153055 | 23 |