Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042704.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4199336 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12429 | 0.2959753637241697 | No Hit |
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG | 12180 | 0.29004585486848394 | No Hit |
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT | 9206 | 0.21922513464033364 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 9175 | 0.218486922694445 | No Hit |
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG | 8499 | 0.2023891396163584 | No Hit |
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG | 7407 | 0.17638502849021845 | No Hit |
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG | 6644 | 0.15821548930592838 | No Hit |
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT | 6162 | 0.14673748421178967 | No Hit |
CTTCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGT | 5838 | 0.13902197871282507 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 5788 | 0.13783131428397252 | No Hit |
TCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTG | 5095 | 0.12132870530007601 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4756 | 0.11325600047245564 | No Hit |
GGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAG | 4373 | 0.10413551094744503 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGGGTTA | 730 | 0.0 | 17.232878 | 6 |
GGGTTAG | 770 | 0.0 | 15.857142 | 7 |
TTAACGG | 790 | 0.0 | 15.455696 | 35 |
TAACGGC | 845 | 0.0 | 14.449703 | 36 |
ATAGGGG | 750 | 0.0 | 14.306666 | 3 |
TAGGGGT | 740 | 0.0 | 14.25 | 4 |
TATACTG | 590 | 0.0 | 13.169492 | 5 |
GGTTAGT | 980 | 0.0 | 13.025511 | 8 |
TTTAACG | 980 | 0.0 | 12.836736 | 34 |
ATTAGAG | 1185 | 0.0 | 12.801687 | 3 |
GTATTAG | 1535 | 0.0 | 12.775244 | 1 |
CTAGTAC | 250 | 1.6007107E-10 | 12.58 | 3 |
GTTTAAC | 1090 | 0.0 | 12.389908 | 33 |
TAATACT | 1320 | 0.0 | 12.333333 | 4 |
TACCGAT | 120 | 5.126468E-4 | 12.333333 | 7 |
CCCCTAT | 965 | 0.0 | 12.26943 | 1 |
TTAGACT | 290 | 1.2732926E-11 | 12.120689 | 4 |
GTTAGTC | 850 | 0.0 | 11.970589 | 9 |
GTATAGG | 1190 | 0.0 | 11.970588 | 1 |
AACGGCC | 1055 | 0.0 | 11.924171 | 37 |