FastQCFastQC Report
Fri 29 Apr 2016
ERR1042704.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042704.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4199336
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT124290.2959753637241697No Hit
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG121800.29004585486848394No Hit
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT92060.21922513464033364No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT91750.218486922694445No Hit
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG84990.2023891396163584No Hit
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG74070.17638502849021845No Hit
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG66440.15821548930592838No Hit
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT61620.14673748421178967No Hit
CTTCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGT58380.13902197871282507No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT57880.13783131428397252No Hit
TCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTG50950.12132870530007601No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT47560.11325600047245564No Hit
GGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAG43730.10413551094744503No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGGTTA7300.017.2328786
GGGTTAG7700.015.8571427
TTAACGG7900.015.45569635
TAACGGC8450.014.44970336
ATAGGGG7500.014.3066663
TAGGGGT7400.014.254
TATACTG5900.013.1694925
GGTTAGT9800.013.0255118
TTTAACG9800.012.83673634
ATTAGAG11850.012.8016873
GTATTAG15350.012.7752441
CTAGTAC2501.6007107E-1012.583
GTTTAAC10900.012.38990833
TAATACT13200.012.3333334
TACCGAT1205.126468E-412.3333337
CCCCTAT9650.012.269431
TTAGACT2901.2732926E-1112.1206894
GTTAGTC8500.011.9705899
GTATAGG11900.011.9705881
AACGGCC10550.011.92417137