Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042701.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3794520 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 23501 | 0.6193405226484509 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 18516 | 0.4879668574681383 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 11739 | 0.3093671926884033 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9380 | 0.24719859165322622 | No Hit |
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG | 4263 | 0.11234622560956327 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAGGGGT | 690 | 0.0 | 14.47826 | 4 |
TTAACGG | 930 | 0.0 | 14.123657 | 35 |
GGGTTAG | 630 | 0.0 | 14.095238 | 7 |
GGGGTTA | 645 | 0.0 | 14.054264 | 6 |
TAACGGC | 960 | 0.0 | 13.874999 | 36 |
GTATTAG | 1315 | 0.0 | 13.787072 | 1 |
ATAGGGG | 685 | 0.0 | 13.503651 | 3 |
TAACGCC | 110 | 2.4586965E-4 | 13.454545 | 4 |
ATTAGAG | 1200 | 0.0 | 13.4125 | 3 |
TTTAACG | 1080 | 0.0 | 13.189814 | 34 |
TAATACT | 1235 | 0.0 | 13.182186 | 4 |
TATTAGA | 1315 | 0.0 | 13.083651 | 2 |
CCCCTAT | 990 | 0.0 | 13.080809 | 1 |
CCGTTCG | 85 | 0.009409947 | 13.058824 | 9 |
TCTAATA | 995 | 0.0 | 13.015076 | 2 |
TAACTAG | 840 | 0.0 | 12.773809 | 26 |
CTACACT | 690 | 0.0 | 12.601449 | 4 |
AACTAGA | 870 | 0.0 | 12.545977 | 27 |
AACGGCC | 1110 | 0.0 | 12.333333 | 37 |
CTATACC | 1085 | 0.0 | 12.276498 | 4 |