FastQCFastQC Report
Fri 29 Apr 2016
ERR1042693.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042693.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8676317
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT370810.4273818026704188No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT331840.38246643132103175No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT240670.27738728310641486No Hit
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG189070.21791504390630262No Hit
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT156890.18082557380049621No Hit
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG129900.1497179044979569No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT124490.1434825398841467No Hit
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG113820.13118469507280567No Hit
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG112450.12960568407078718No Hit
CTTCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGT100310.11561357197990806No Hit
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT96840.11161417914997804No Hit
TCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTG89090.10268181764220925No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTAACGG16950.014.62536835
TAACGGC17150.014.34693936
TAGGGGT15650.014.0670934
GGGGTTA16000.013.9906246
GTATTAG28700.013.0853661
TAATACT31000.013.0096774
ATAGGGG17150.012.8367353
TCTAATA26900.012.5855022
ATTAGAG24350.012.5359343
CTAATAC32550.012.2196623
TATTAGA26050.012.2149722
GGGTTAG17250.012.0115957
AACGGCC21200.011.95518937
CTCTAAT28500.011.8789471
TTTAACG22050.011.82993134
AATACTG34100.011.826985
GTATAGG27450.011.7941711
GGTAAAC24300.011.64814835
TAGGACC19100.011.6230364
GTACTAT11600.011.48275851