Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042691.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3868547 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14510 | 0.3750762237087982 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 13375 | 0.34573704287423673 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 8238 | 0.2129481689119972 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5964 | 0.15416640924874378 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATTAG | 1065 | 0.0 | 15.4600935 | 1 |
GTCTAGA | 470 | 0.0 | 14.957447 | 1 |
TAATACT | 1170 | 0.0 | 14.230768 | 4 |
TTAACGG | 600 | 0.0 | 14.183333 | 35 |
TAGACCG | 80 | 0.006302174 | 13.875 | 5 |
ATAGGGG | 575 | 0.0 | 13.191304 | 3 |
CGCGCGA | 85 | 0.009409991 | 13.058823 | 10 |
ATTAGAG | 880 | 0.0 | 13.034091 | 3 |
TAGGGGT | 640 | 0.0 | 13.0078125 | 4 |
TACTGGT | 1115 | 0.0 | 12.941704 | 7 |
TAACGGC | 665 | 0.0 | 12.796993 | 36 |
TCTAATA | 1065 | 0.0 | 12.680751 | 2 |
CCCCTAT | 870 | 0.0 | 12.333333 | 1 |
GGGGTTA | 615 | 0.0 | 12.333333 | 6 |
GAACCGT | 240 | 1.1314114E-9 | 12.333333 | 6 |
TATTAGA | 1000 | 0.0 | 12.210001 | 2 |
GGGTTAG | 625 | 0.0 | 12.136 | 7 |
TTAATAC | 555 | 0.0 | 11.999999 | 3 |
TAACTAG | 805 | 0.0 | 11.720497 | 26 |
GGCGAAT | 255 | 2.935849E-9 | 11.607843 | 32 |