FastQCFastQC Report
Fri 29 Apr 2016
ERR1042691.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042691.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3868547
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT145100.3750762237087982No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT133750.34573704287423673No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT82380.2129481689119972No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT59640.15416640924874378No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATTAG10650.015.46009351
GTCTAGA4700.014.9574471
TAATACT11700.014.2307684
TTAACGG6000.014.18333335
TAGACCG800.00630217413.8755
ATAGGGG5750.013.1913043
CGCGCGA850.00940999113.05882310
ATTAGAG8800.013.0340913
TAGGGGT6400.013.00781254
TACTGGT11150.012.9417047
TAACGGC6650.012.79699336
TCTAATA10650.012.6807512
CCCCTAT8700.012.3333331
GGGGTTA6150.012.3333336
GAACCGT2401.1314114E-912.3333336
TATTAGA10000.012.2100012
GGGTTAG6250.012.1367
TTAATAC5550.011.9999993
TAACTAG8050.011.72049726
GGCGAAT2552.935849E-911.60784332