FastQCFastQC Report
Fri 29 Apr 2016
ERR1042689.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042689.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5188757
Sequences flagged as poor quality0
Sequence length43
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT320270.6172383867658479No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT316800.6105508506179804No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT165040.31807232445073064No Hit
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG134480.25917575249717806No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT112650.2171040193248595No Hit
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT99890.1925123878416353No Hit
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG88860.17125488821311155No Hit
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG81300.15668492473245518No Hit
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG74290.14317494536745506No Hit
CTTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGT69040.1330569151725548No Hit
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT59820.11528772690646336No Hit
TCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTG59250.11418919791387418No Hit
GGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAG54480.1049962447653648No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCTCGT13750.018.70181837
CCCACGA14650.018.31058119
TATACAC17900.018.1899433
ATCTCCG15150.017.7062710
ACGAGAC15850.017.27444622
CACGAGA15600.017.19551321
TCTCCGA16250.016.73538411
GCCCACG17200.015.70348818
TACACAT20300.015.4926115
CGAGCCC17750.015.32112815
CATCTCG17400.015.20402336
ACCTCTC17750.014.90422627
CTACATC18200.014.53571533
TCTACAT18600.014.42204332
TACATCT18250.014.1917834
ACACATC21400.014.1775716
GACCTCT19750.014.14430426
TTATACA21750.014.119542
TTAACGG8750.013.95428635
CGAGACC19400.013.8273223