Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042689.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5188757 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 32027 | 0.6172383867658479 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 31680 | 0.6105508506179804 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 16504 | 0.31807232445073064 | No Hit |
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG | 13448 | 0.25917575249717806 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11265 | 0.2171040193248595 | No Hit |
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT | 9989 | 0.1925123878416353 | No Hit |
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG | 8886 | 0.17125488821311155 | No Hit |
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG | 8130 | 0.15668492473245518 | No Hit |
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG | 7429 | 0.14317494536745506 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACCTCTCTACATCTCGT | 6904 | 0.1330569151725548 | No Hit |
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT | 5982 | 0.11528772690646336 | No Hit |
TCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTG | 5925 | 0.11418919791387418 | No Hit |
GGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAG | 5448 | 0.1049962447653648 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCTCGT | 1375 | 0.0 | 18.701818 | 37 |
CCCACGA | 1465 | 0.0 | 18.310581 | 19 |
TATACAC | 1790 | 0.0 | 18.189943 | 3 |
ATCTCCG | 1515 | 0.0 | 17.70627 | 10 |
ACGAGAC | 1585 | 0.0 | 17.274446 | 22 |
CACGAGA | 1560 | 0.0 | 17.195513 | 21 |
TCTCCGA | 1625 | 0.0 | 16.735384 | 11 |
GCCCACG | 1720 | 0.0 | 15.703488 | 18 |
TACACAT | 2030 | 0.0 | 15.492611 | 5 |
CGAGCCC | 1775 | 0.0 | 15.321128 | 15 |
CATCTCG | 1740 | 0.0 | 15.204023 | 36 |
ACCTCTC | 1775 | 0.0 | 14.904226 | 27 |
CTACATC | 1820 | 0.0 | 14.535715 | 33 |
TCTACAT | 1860 | 0.0 | 14.422043 | 32 |
TACATCT | 1825 | 0.0 | 14.19178 | 34 |
ACACATC | 2140 | 0.0 | 14.177571 | 6 |
GACCTCT | 1975 | 0.0 | 14.144304 | 26 |
TTATACA | 2175 | 0.0 | 14.11954 | 2 |
TTAACGG | 875 | 0.0 | 13.954286 | 35 |
CGAGACC | 1940 | 0.0 | 13.82732 | 23 |