Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042685.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2143292 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 8478 | 0.3955597277459161 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7839 | 0.36574577799011987 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 3182 | 0.14846320520022468 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2881 | 0.13441938849209534 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATACCGT | 115 | 1.2433447E-6 | 16.086956 | 6 |
GAACGTA | 75 | 0.0041059456 | 14.8 | 11 |
GTCGCCC | 650 | 0.0 | 14.515386 | 37 |
TTAACGG | 390 | 0.0 | 14.23077 | 35 |
TCGTATG | 235 | 3.6379788E-12 | 14.170214 | 37 |
AGGTCGC | 645 | 0.0 | 14.054264 | 35 |
ATTAGAG | 460 | 0.0 | 13.673913 | 3 |
GGGTAAG | 395 | 0.0 | 13.582278 | 1 |
TCTCGTA | 260 | 1.8189894E-12 | 13.519231 | 35 |
CGTACTA | 390 | 0.0 | 13.282052 | 29 |
TATACAC | 505 | 0.0 | 13.188119 | 3 |
GACCGTA | 395 | 0.0 | 13.113924 | 26 |
TAACGGC | 395 | 0.0 | 13.113924 | 36 |
TCGAATA | 85 | 0.009408197 | 13.058824 | 13 |
GCTCCGA | 725 | 0.0 | 13.013793 | 29 |
TGTACTG | 1000 | 0.0 | 12.95 | 5 |
TAGACTG | 245 | 1.1459633E-10 | 12.836734 | 5 |
TATACTG | 320 | 0.0 | 12.71875 | 5 |
TGCTCGG | 815 | 0.0 | 12.711657 | 10 |
GTATTAG | 555 | 0.0 | 12.666667 | 1 |