FastQCFastQC Report
Fri 29 Apr 2016
ERR1042685.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042685.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2143292
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT84780.3955597277459161No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT78390.36574577799011987No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT31820.14846320520022468No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT28810.13441938849209534No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATACCGT1151.2433447E-616.0869566
GAACGTA750.004105945614.811
GTCGCCC6500.014.51538637
TTAACGG3900.014.2307735
TCGTATG2353.6379788E-1214.17021437
AGGTCGC6450.014.05426435
ATTAGAG4600.013.6739133
GGGTAAG3950.013.5822781
TCTCGTA2601.8189894E-1213.51923135
CGTACTA3900.013.28205229
TATACAC5050.013.1881193
GACCGTA3950.013.11392426
TAACGGC3950.013.11392436
TCGAATA850.00940819713.05882413
GCTCCGA7250.013.01379329
TGTACTG10000.012.955
TAGACTG2451.1459633E-1012.8367345
TATACTG3200.012.718755
TGCTCGG8150.012.71165710
GTATTAG5550.012.6666671