FastQCFastQC Report
Fri 29 Apr 2016
ERR1042681.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042681.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9479824
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA147050.015.0340011
CGCTATA6400.012.42968752
GTATCAA189300.011.5710512
TACTCCG24350.011.3203285
TAATACT18500.011.34
CGCGTAT2502.7212081E-811.09999912
TATACTG10100.010.9900995
TTATACC8600.010.970934
GTATTAG24300.010.6584361
TATACAC14450.010.6262973
TCACGTA21400.010.54672925
TATTAAG9800.010.3826522
CGCGATA1250.00970343810.3614
TATTAGA21650.010.3394922
GTATTAA10200.010.3382351
TACCCCG12750.010.3019615
TTAACGG13150.010.26996235
CCGGTCT23750.010.204219
ATTACTC26200.010.0973283
GTCGGGA13450.010.0408922
Produced by FastQC (version 0.11.5)