Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042679.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 14024416 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 63031 | 0.4494376093806687 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 62716 | 0.44719152654912686 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 38265 | 0.27284558586967184 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 29651 | 0.21142413345411315 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGT | 14319 | 0.10210050814237112 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACAC | 3660 | 0.0 | 19.005465 | 3 |
ATCTCCG | 3265 | 0.0 | 18.245024 | 10 |
GGTATCA | 30900 | 0.0 | 17.530098 | 1 |
ATCTCGT | 3230 | 0.0 | 17.297215 | 37 |
CCCACGA | 3545 | 0.0 | 17.117065 | 19 |
ACGAGAC | 3710 | 0.0 | 16.355795 | 22 |
TCTCCGA | 3735 | 0.0 | 15.899598 | 11 |
CGAGCCC | 3910 | 0.0 | 15.566496 | 15 |
TACACAT | 4925 | 0.0 | 15.175634 | 5 |
GCCCACG | 4240 | 0.0 | 14.398584 | 18 |
CTTATAC | 4530 | 0.0 | 14.048565 | 1 |
CCGAGCC | 4900 | 0.0 | 13.252041 | 14 |
TTATACA | 4970 | 0.0 | 13.177063 | 2 |
ATACACA | 6695 | 0.0 | 12.766243 | 4 |
CACGAGA | 4915 | 0.0 | 12.684639 | 21 |
GTATCAA | 43160 | 0.0 | 12.53765 | 2 |
ACACATC | 5355 | 0.0 | 12.506069 | 6 |
ACATCTC | 5335 | 0.0 | 12.448922 | 8 |
GGATCTC | 4890 | 0.0 | 12.030675 | 35 |
GATCTCG | 4940 | 0.0 | 12.0212555 | 36 |