FastQCFastQC Report
Fri 29 Apr 2016
ERR1042676.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042676.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9766328
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA76150.025.314511
GTATCAA119150.016.116662
TATACTG11700.012.9658135
ATCTCGT12550.012.67729137
TATACAC16550.012.631423
GTCGTAT1050.002646016712.3333331
GTCGGGA23850.011.7903572
ATTAGAG17450.011.6618913
TCTATAC6900.011.5289863
TTAGACT7850.011.3121024
TACTCCG22850.011.1728675
TTAACGG13150.011.11406935
ATCAACG188200.011.0488842
TATTAGA18450.011.029812
TACACAT22900.010.98695
TCAACGC193100.010.7876753
AACGCAG193050.010.7808865
TAATACT19250.010.7636374
TATAGTG9700.010.6804125
CAACGCA196200.010.5889414
Produced by FastQC (version 0.11.5)