Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042673.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6018010 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 53 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6195 | 0.0 | 17.678772 | 1 |
TATTAGA | 1460 | 0.0 | 13.684932 | 2 |
TCGTATG | 310 | 0.0 | 13.129032 | 37 |
TTAACGC | 130 | 7.0074086E-5 | 12.807693 | 35 |
GTATCAA | 8585 | 0.0 | 12.714036 | 2 |
ACTATCG | 220 | 4.096364E-9 | 12.613636 | 8 |
ATTAGAG | 1430 | 0.0 | 12.29021 | 3 |
GTATTAG | 2015 | 0.0 | 12.210917 | 1 |
TCGCTAA | 260 | 3.092282E-10 | 12.096154 | 14 |
CGTATAC | 155 | 2.7241758E-5 | 11.935484 | 3 |
TTAGACT | 405 | 0.0 | 11.876543 | 4 |
CGACTAT | 125 | 7.22651E-4 | 11.84 | 36 |
TTAACGG | 1050 | 0.0 | 11.804762 | 35 |
CCTCTAG | 1530 | 0.0 | 11.728758 | 1 |
TATACAC | 735 | 0.0 | 11.578232 | 3 |
TAGTACT | 420 | 0.0 | 11.45238 | 4 |
TAATACT | 1225 | 0.0 | 11.17551 | 4 |
CTCGTAT | 350 | 3.6379788E-12 | 11.1 | 36 |
GTCGGGA | 895 | 0.0 | 10.955306 | 2 |
CTCTAGC | 1385 | 0.0 | 10.953069 | 2 |