FastQCFastQC Report
Fri 29 Apr 2016
ERR1042673.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042673.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6018010
Sequences flagged as poor quality0
Sequence length43
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA61950.017.6787721
TATTAGA14600.013.6849322
TCGTATG3100.013.12903237
TTAACGC1307.0074086E-512.80769335
GTATCAA85850.012.7140362
ACTATCG2204.096364E-912.6136368
ATTAGAG14300.012.290213
GTATTAG20150.012.2109171
TCGCTAA2603.092282E-1012.09615414
CGTATAC1552.7241758E-511.9354843
TTAGACT4050.011.8765434
CGACTAT1257.22651E-411.8436
TTAACGG10500.011.80476235
CCTCTAG15300.011.7287581
TATACAC7350.011.5782323
TAGTACT4200.011.452384
TAATACT12250.011.175514
CTCGTAT3503.6379788E-1211.136
GTCGGGA8950.010.9553062
CTCTAGC13850.010.9530692
Produced by FastQC (version 0.11.5)