Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042672.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10299350 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 74860 | 0.7268419851738216 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 61840 | 0.6004262404909048 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 37888 | 0.3678678751571701 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 34242 | 0.3324675829057174 | No Hit |
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11851 | 0.1150655138431066 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCTCGT | 1565 | 0.0 | 16.785942 | 37 |
TTAACGG | 1880 | 0.0 | 16.039894 | 35 |
TAACGGC | 2005 | 0.0 | 15.132169 | 36 |
CCCACGA | 1910 | 0.0 | 14.722512 | 19 |
ATCTCCG | 1890 | 0.0 | 14.68254 | 10 |
ACGAGAC | 2035 | 0.0 | 14.363636 | 22 |
TCTCCGA | 1960 | 0.0 | 14.158164 | 11 |
TATACAC | 2485 | 0.0 | 14.144869 | 3 |
CGAGCCC | 2060 | 0.0 | 13.56068 | 15 |
CGAGACT | 2205 | 0.0 | 13.507936 | 23 |
TCGTATG | 415 | 0.0 | 13.373494 | 37 |
CACGAGA | 2165 | 0.0 | 13.330254 | 21 |
GCCCACG | 2290 | 0.0 | 13.006551 | 18 |
GACTAGG | 2125 | 0.0 | 12.884706 | 26 |
TAATACT | 3555 | 0.0 | 12.853728 | 4 |
GTATTAG | 3995 | 0.0 | 12.827284 | 1 |
GGTATCA | 38340 | 0.0 | 12.646974 | 1 |
CTCTAAT | 2755 | 0.0 | 12.422868 | 1 |
AACGGCC | 2510 | 0.0 | 12.38247 | 37 |
CTAATAC | 3795 | 0.0 | 12.382082 | 3 |