Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042671.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8274255 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 86113 | 1.0407341809020874 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 73643 | 0.8900257485417116 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 48495 | 0.5860950623349171 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 38345 | 0.4634254080880998 | No Hit |
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12361 | 0.14939109321624727 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9647 | 0.11659055709547266 | No Hit |
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9269 | 0.11202216997179806 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGAGACG | 900 | 0.0 | 17.883333 | 23 |
GACGGAC | 970 | 0.0 | 16.592783 | 26 |
ATCTCGT | 960 | 0.0 | 15.994791 | 37 |
TATCTCG | 1045 | 0.0 | 15.401915 | 36 |
GGTATCA | 35000 | 0.0 | 14.937428 | 1 |
ACGGACT | 1140 | 0.0 | 14.442982 | 27 |
ATCTCCG | 1190 | 0.0 | 14.302521 | 10 |
CCCACGA | 1180 | 0.0 | 14.266949 | 19 |
CGAGCCC | 1225 | 0.0 | 14.195919 | 15 |
TCTCCGA | 1245 | 0.0 | 13.967872 | 11 |
TACCCCG | 875 | 0.0 | 13.320001 | 5 |
TATACTG | 1170 | 0.0 | 13.282051 | 5 |
CGGACTC | 1280 | 0.0 | 13.152345 | 28 |
GTCGGGA | 1270 | 0.0 | 13.110236 | 2 |
ACGAGAC | 1300 | 0.0 | 12.95 | 22 |
CACGAGA | 1405 | 0.0 | 12.508896 | 21 |
TTAACGG | 1220 | 0.0 | 12.282787 | 35 |
ATTTCGG | 1435 | 0.0 | 11.989547 | 29 |
TAACGGC | 1275 | 0.0 | 11.752942 | 36 |
GCCCACG | 1465 | 0.0 | 11.744027 | 18 |