Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042668.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7727746 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 49739 | 0.6436417553061397 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 39466 | 0.5107051913973363 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 23708 | 0.30679062174144955 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 22790 | 0.29491134931194685 | No Hit |
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7766 | 0.10049502144609825 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTACTA | 720 | 0.0 | 13.618055 | 29 |
TTAACGG | 1230 | 0.0 | 12.784553 | 35 |
GTATTAG | 2515 | 0.0 | 12.504971 | 1 |
GACCGTA | 755 | 0.0 | 12.496689 | 26 |
TAACGGC | 1335 | 0.0 | 11.779026 | 36 |
TAATACT | 2345 | 0.0 | 11.754798 | 4 |
ATCTCGT | 895 | 0.0 | 11.575419 | 37 |
CGTCGAA | 145 | 1.940948E-4 | 11.482759 | 19 |
TACCCCG | 955 | 0.0 | 11.42932 | 5 |
TATTAGA | 2135 | 0.0 | 11.351288 | 2 |
CGTGCAT | 950 | 0.0 | 11.294737 | 10 |
TCTAATA | 2240 | 0.0 | 11.149553 | 2 |
AATACTG | 2560 | 0.0 | 11.128907 | 5 |
CTAGCGT | 200 | 2.6626185E-6 | 11.1 | 4 |
TCGCTAA | 250 | 2.7210262E-8 | 11.099999 | 14 |
TATACAC | 1370 | 0.0 | 10.937956 | 3 |
GGTATCA | 32375 | 0.0 | 10.92 | 1 |
CTAATAC | 2825 | 0.0 | 10.870796 | 3 |
CGTTATA | 205 | 3.579984E-6 | 10.8292675 | 2 |
GTACTAG | 890 | 0.0 | 10.808989 | 30 |