FastQCFastQC Report
Fri 29 Apr 2016
ERR1042667.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042667.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1225920
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT16720.1363873662229183No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT13270.10824523623074915No Hit
CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATC13180.1075110937092143No Hit
ATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGA13150.10726637953536934No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACATCG502.702244E-422.25
GTCGGGA4500.019.3222222
GGTATCA21150.018.4562641
CGTCACT1403.4731784E-815.8571421
GTCGGTT1954.1836756E-1115.17948712
GGTCGGG5800.014.9913811
CCTAGTA750.004104614714.7999992
GTATTAA1152.2099706E-514.4782611
GCGCAAG1051.6557728E-414.0952381
GTGGGTA6450.014.0542649
TAATACG800.00629893613.8750014
GTATAAG1203.3007113E-513.8749991
TAACACA1753.5652192E-813.7428584
GTTAGCC1501.3055833E-613.5666663
GTATCAA28650.013.560212
GGGAGTG8050.013.5590075
TCGTAGC1102.4565696E-413.45454514
CGGGAGT8550.013.4152054
TGGGTAA6350.013.40157510
GTAGTAC1254.8448946E-513.323
Produced by FastQC (version 0.11.5)